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CKMRpop: Forward-in-time simulation and tabulation of pairwise kin relationships in age-structured populations

Anderson, Eric C.
In press (available online)
Molecular Ecology Resources
https://doi.org/10.1111/1755-0998.13513
CKMRpop: Forward-in-time simulation and tabulation of pairwise kin relationships in age-structured populations Anderson, Eric C. Molecular Ecology Resources
IP--Anderson2
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Effects of survey response mode, purported topic, and incentives on response rates in human dimensions of fisheries and wildlife research

Anderson, Leif, Matt Jans, Adam Lee, Christopher Doyle, Heather Driscoll, and James Hilger
In press (available online)
Human Dimensions of Wildlife
https://doi.org/10.1080/10871209.2021.1907633
Effects of survey response mode, purported topic, and incentives on response rates in human dimensions of fisheries and wildlife research Anderson, Leif, Matt Jans, Adam Lee, Christopher Doyle, Heather Driscoll, and James Hilger Human Dimensions of Wildlife
IP--Anderson
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Acoustic-based estimates of Cuvier's beaked whale (Ziphius cavirostris) density and abundance along the U.S. West Coast from drifting hydrophone recorders

Barlow, J., J.E. Moore, J.L.K. McCullough, and E.T. Griffiths
In press (available online)
Marine Mammal Science
https://doi.org/10.1111/mms.12872
Acoustic-based estimates of Cuvier's beaked whale (Ziphius cavirostris) density and abundance along the U.S. West Coast from drifting hydrophone recorders Barlow, J., J.E. Moore, J.L.K. McCullough, and E.T. Griffiths Marine Mammal Science
IP--Barlow2
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Unique morphological and acoustic characteristics of beaked whales (Mesoplodon sp.) off the west coast of Baja California, Mexico

Barlow, Jay, Gustavo Cardenas-Hinojosa, E. Elizabeth Henderson, Dawn Breese, Diana Lopez-Arzate, Eva Hidalgo Pla, and Barbara L. Taylor
In press (available online)
Marine Mammal Science
https://doi.org/10.1111/mms.12853
Unique morphological and acoustic characteristics of beaked whales (Mesoplodon sp.) off the west coast of Baja California, Mexico Barlow, Jay, Gustavo Cardenas-Hinojosa, E. Elizabeth Henderson, Dawn Breese, Diana Lopez-Arzate, Eva Hidalgo Pla, and Barbara L. Taylor Marine Mammal Science
IP--Barlow
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Polygenic basis and the role of genome duplication in adaptation to similar selective environments

Campbell, Matthew A., Eric C. Anderson, John Carlos Garza, and Devon E. Pearse
In press (available online)
Journal of Heredity
https://doi.org/10.1093/jhered/esab049
Polygenic basis and the role of genome duplication in adaptation to similar selective environments Campbell, Matthew A., Eric C. Anderson, John Carlos Garza, and Devon E. Pearse Journal of Heredity
IP--Campbell
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Using decades of spawning data and hydraulic models to construct a temperature dependent resource selection function for management of an endangered salmonid

Dudley, Peter N., Sara N. John, Miles E. Daniels, and Eric M. Danner
In press (available online)
Canadian Journal of Fisheries and Aquatic Sciences
https://doi.org/10.1139/cjfas-2021-0022
Using decades of spawning data and hydraulic models to construct a temperature dependent resource selection function for management of an endangered salmonid Dudley, Peter N., Sara N. John, Miles E. Daniels, and Eric M. Danner Canadian Journal of Fisheries and Aquatic Sciences
IP--Dudley
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Fin whale (Balaenoptera physalus) bones from a 5850 year old shell midden on San Miguel Island, California, USA

Erlandson, Jon M., Robert L. DeLong, and Kelly M. Robertson
In press (available online)
The Journal of Island and Coastal Archaeology
https://doi.org/10.1080/15564894.2020.1761486
Fin whale (Balaenoptera physalus) bones from a 5850 year old shell midden on San Miguel Island, California, USA Erlandson, Jon M., Robert L. DeLong, and Kelly M. Robertson The Journal of Island and Coastal Archaeology
IP--Erlandson
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A decade of photo-identification reveals contrasting abundance and trends of Type B killer whales in the coastal waters of the Antarctic Peninsula

Fearnbach, Holly, John W. Durban, David K. Ellifrit, Alyssa Paredes, Leigh S. Hickmott, and Robert L. Pitman
In press (available online)
Marine Mammal Science
https://doi.org/10.1111/mms.12846
A decade of photo-identification reveals contrasting abundance and trends of Type B killer whales in the coastal waters of the Antarctic Peninsula Fearnbach, Holly, John W. Durban, David K. Ellifrit, Alyssa Paredes, Leigh S. Hickmott, and Robert L. Pitman Marine Mammal Science
IP--Fearnbach
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From drought to deluge: spatiotemporal variation in migration routing, survival, travel time and floodplain use of an endangered migratory fish

Hance, Dalton J., Russell W. Perry, Adam C. Pope, Arnold J. Ammann, Jason L. Hassrick, and Gabriel Hansen
In press (available online)
Canadian Journal of Fisheries and Aquatic Sciences
https://doi.org/10.1139/cjfas-2021-0042
From drought to deluge: spatiotemporal variation in migration routing, survival, travel time and floodplain use of an endangered migratory fish Hance, Dalton J., Russell W. Perry, Adam C. Pope, Arnold J. Ammann, Jason L. Hassrick, and Gabriel Hansen Canadian Journal of Fisheries and Aquatic Sciences
IP--Hance
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Population structure of North Pacific gray whales in light of trans-Pacific movements

Lang, Aimee R., David W. Weller, Alexander M. Burdin, Kelly Robertson, Olga Sychenko, Jorge Urban R., Sergio Martinez-Aguilar, Victoria L. Pease, Richard G. LeDuc, Dennis I. Litovka, Vladimir N. Burkanov, and Robert L. Brownell Jr.
In press (available online)
Marine Mammal Science
https://doi.org/10.1111/mms.12875
Population structure of North Pacific gray whales in light of trans-Pacific movements Lang, Aimee R., David W. Weller, Alexander M. Burdin, Kelly Robertson, Olga Sychenko, Jorge Urban R., Sergio Martinez-Aguilar, Victoria L. Pease, Richard G. LeDuc, Dennis I. Litovka, Vladimir N. Burkanov, and Robert L. Brownell Jr. Marine Mammal Science
IP--Lang
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Informational constraints on predator-prey interactions

Martin, Benjamin T., Michael A. Gil, Ashkaan K. Fahimipour, and Andrew M. Hein
In press (available online)
Oikos
https://doi.org/10.1111/oik.08143
Informational constraints on predator-prey interactions Martin, Benjamin T., Michael A. Gil, Ashkaan K. Fahimipour, and Andrew M. Hein Oikos
IP--Martin
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Phylogenomic species delimitation dramatically reduces species diversity in an Antarctic adaptive radation

Parker, Elyse, Alex Dornburg, Carl D. Struthers, Christopher D. Jones, and Thomas J. Near
In press (available online)
Systematic Biology
https://doi.org/10.1093/sysbio/syab057
Phylogenomic species delimitation dramatically reduces species diversity in an Antarctic adaptive radation Parker, Elyse, Alex Dornburg, Carl D. Struthers, Christopher D. Jones, and Thomas J. Near Systematic Biology
IP--Parker
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Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake Hitch Lavinia exilicauda chi

Young, Matthew J., Veronica Larwood, Justin K. Clause, Miranda Bell-Tilcock, George Whitman, Rachel C. Johnson, and Frederick Feyrer
In press (available online)
Canadian Journal of Fisheries and Aquatic Sciences
https://doi.org/10.1139/cjfas-2020-0318
Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake Hitch Lavinia exilicauda chi Young, Matthew J., Veronica Larwood, Justin K. Clause, Miranda Bell-Tilcock, George Whitman, Rachel C. Johnson, and Frederick Feyrer Canadian Journal of Fisheries and Aquatic Sciences
IP--Young
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Capacity of two Sierra Nevada rivers for reintroduction of anadromous salmonids: insights from a high-resolution view

Boughton, David A., Lee R. Harrison, Sara N. John, Rosealea M. Bond, Colin L. Nicol, Carl J. Legleiter, and Ryan T. Richardson
In press
Transactions of the American Fisheries Society
Capacity of two Sierra Nevada rivers for reintroduction of anadromous salmonids: insights from a high-resolution view Boughton, David A., Lee R. Harrison, Sara N. John, Rosealea M. Bond, Colin L. Nicol, Carl J. Legleiter, and Ryan T. Richardson Transactions of the American Fisheries Society
IP--Boughton
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Surveys of the Angolan coast uncover the largest olive ridley nesting population in the Atlantic and non-arribada population globally

Morais, M., and M. Tiwari
In press
Oryx
Surveys of the Angolan coast uncover the largest olive ridley nesting population in the Atlantic and non-arribada population globally Morais, M., and M. Tiwari Oryx
IP--Morais
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Using Antarctic blue whale photo ID data from IDCR/SOWER: capture-recapture estimates of abundance

Olson, P.A., and D. Kinzey
In press
Journal of Cetacean Research and Management, Special Issue
Using Antarctic blue whale photo ID data from IDCR/SOWER: capture-recapture estimates of abundance Olson, P.A., and D. Kinzey Journal of Cetacean Research and Management, Special Issue
IP--Olson
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Globally important loggerhead sea turtle conservation refuge: Maio Island, Cabo Verde

Patino-Martinez, J., L. Dos Passos, I. Afonso, A. Teixidor, M. Tiwari, T. Szekely, and R. Moreno
In press
Oryx
Globally important loggerhead sea turtle conservation refuge: Maio Island, Cabo Verde Patino-Martinez, J., L. Dos Passos, I. Afonso, A. Teixidor, M. Tiwari, T. Szekely, and R. Moreno Oryx
IP--PatinoMartinez
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Population genetics and species distribution modeling highlight conservation needs of the endemic trout from the Northern Sierra Madre Occidental

Abadia-Cardoso, A., R. Hernandez-Guzman, A. Varela-Romero, J.C. Garza, and F.J. Garcia-De Leon
2021
Conservation Genetics 22:629-643
https://doi.org/10.1007/s10592-021-01388-5
Population genetics and species distribution modeling highlight conservation needs of the endemic trout from the Northern Sierra Madre Occidental Abadia-Cardoso, A., R. Hernandez-Guzman, A. Varela-Romero, J.C. Garza, and F.J. Garcia-De Leon Conservation Genetics 22:629-643
2021AbadiaCardoso
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Are long-term changes in mixed layer depth influencing North Pacific marine heatwaves?

Amaya, Dillon J., Michael A. Alexander, Antonietta Capotondi, Clara Deser, Kristopher B. Karnauskas, Arthur J. Miller, and Nathan J. Mantua
2021
Bulletin of the American Meteorological Society 102(1):S59-S66
https://doi.org/10.1175/BAMS-D-20-0144.1
Are long-term changes in mixed layer depth influencing North Pacific marine heatwaves? Amaya, Dillon J., Michael A. Alexander, Antonietta Capotondi, Clara Deser, Kristopher B. Karnauskas, Arthur J. Miller, and Nathan J. Mantua Bulletin of the American Meteorological Society 102(1):S59-S66
2021Amaya
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Genomic signatures of divergent selection are associated with social behaviour for spinner dolphin ecotytpes

Andrews, Kimberly R., Brendan Epstein, Matthew S. Leslie, Paul Fiedler, Phillip A. Morin, and A. Rus Hoelzel
2021
Molecular Ecology 30(9):1993-2008
https://doi.org/10.1111/mec.15865
Genomic signatures of divergent selection are associated with social behaviour for spinner dolphin ecotytpes Andrews, Kimberly R., Brendan Epstein, Matthew S. Leslie, Paul Fiedler, Phillip A. Morin, and A. Rus Hoelzel Molecular Ecology 30(9):1993-2008
2021Andrews
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Alternative migratory strategies are widespread in subyearling Chinook salmon

Apgar, Travis M., Joseph E. Merz, Benjamin T. Martin, and Eric P. Palkovacs
2021
Ecology of Freshwater Fish 30(1):125-139
https://doi.org/10.1111/eff.12570
Alternative migratory strategies are widespread in subyearling Chinook salmon Apgar, Travis M., Joseph E. Merz, Benjamin T. Martin, and Eric P. Palkovacs Ecology of Freshwater Fish 30(1):125-139
2021Apgar
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Keeping close to the river, shore and surface: the first marine migration of brown trout (Salmo trutta) and Arctic charr (Salvelinus alpinus) post-smolts

Atencio, Benjamin J., Eva B. Thorstad, Augun H. Rikardsen, and Jenny L.A. Jensen
2021
Journal of Fish Biology 99(2):462-471
https://doi.org/10.1111/jfb.14737
Keeping close to the river, shore and surface: the first marine migration of brown trout (Salmo trutta) and Arctic charr (Salvelinus alpinus) post-smolts Atencio, Benjamin J., Eva B. Thorstad, Augun H. Rikardsen, and Jenny L.A. Jensen Journal of Fish Biology 99(2):462-471
2021Atencio
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Maternal environment drives larval rockfish gene expression patters [abstract]

Baker, J.B., K.V. Saksa, N.S. Kashef, D.M. Stafford, S.M. Sogard, S.L. Hamilton, and C.A. Logan
2021
Integrative and Comparative Biology 61(supp.1):e36-e37
https://doi.org/10.1093/icb/icab001
Maternal environment drives larval rockfish gene expression patters [abstract] Baker, J.B., K.V. Saksa, N.S. Kashef, D.M. Stafford, S.M. Sogard, S.L. Hamilton, and C.A. Logan Integrative and Comparative Biology 61(supp.1):e36-e37
2021Baker
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Species and population specific gene expression in blood transcriptomes of marine turtles

Banerjee, Shreya M., Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch, Heather S. Harris, Lauren Kenyon, Richard E. Connon, Eleanor J. Sterling, Eugenia Naro-Maciel, Kathryn McFadden, Margaret M. Lamont, James Benge, Nadia B. Fernandez, Jeffrey A. Seminoff, Scott R. Benson, Rebecca L. Lewison, Tomoharu Eguchi, Tammy M. Summers, Jessy R. Hapdei, Marc R. Rice, Summer Martin, T. Todd Jones, Peter H. Dutton, George H. Balazs, and Lisa M. Komoroske
2021
BMC Genomics 22:346 (16 p.)
https://doi.org/10.1186/s12864-021-07656-5
Species and population specific gene expression in blood transcriptomes of marine turtles Banerjee, Shreya M., Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch, Heather S. Harris, Lauren Kenyon, Richard E. Connon, Eleanor J. Sterling, Eugenia Naro-Maciel, Kathryn McFadden, Margaret M. Lamont, James Benge, Nadia B. Fernandez, Jeffrey A. Seminoff, Scott R. Benson, Rebecca L. Lewison, Tomoharu Eguchi, Tammy M. Summers, Jessy R. Hapdei, Marc R. Rice, Summer Martin, T. Todd Jones, Peter H. Dutton, George H. Balazs, and Lisa M. Komoroske BMC Genomics 22:346 (16 p.)
2021Banerjee
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Design of a flooded housing for a towed autonomous hydrophone recording system

Barlow, Jay
2021
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-647. 12 p.
https://doi.org/10.25923/rmzp-fh90
Design of a flooded housing for a towed autonomous hydrophone recording system Barlow, Jay U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-647. 12 p.
2021Barlow3
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Recommended snapshot length for acoustic point-transect surveys of intermittently available Cuvier's beaked whales

Barlow, Jay, Jennifer S. Trickey, Gregory S. Schorr, Shannon Rankin, and Jeffrey E. Moore
2021
Journal of the Acoustical Society of America 149:3830-3840
https://doi.org/10.1121/10.0005108
Recommended snapshot length for acoustic point-transect surveys of intermittently available Cuvier's beaked whales Barlow, Jay, Jennifer S. Trickey, Gregory S. Schorr, Shannon Rankin, and Jeffrey E. Moore Journal of the Acoustical Society of America 149:3830-3840
2021Barlow2
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Acoustic detection range and population density of Cuvier's beaked whales estimated from near-surface hydrophones

Barlow, Jay, Selene Fregosi, Len Thomas, Danielle Harris, and Emily T. Griffiths
2021
Journal of the Acoustical Society of America 149(1):111-125
https://doi.org/10.1121/10.0002881
Acoustic detection range and population density of Cuvier's beaked whales estimated from near-surface hydrophones Barlow, Jay, Selene Fregosi, Len Thomas, Danielle Harris, and Emily T. Griffiths Journal of the Acoustical Society of America 149(1):111-125
2021Barlow
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Improving the IEA approach using principles of open data science

Bastille, Kimberly, Sean Hardison, Lynn deWitt, Jennifer Brown, Jameal Samhouri, Sarah Gaichas, Sean Lucey, Kelly Kearney, Ben Best, Scott Cross, Scott Large, and Ellen Spooner
2021
Coastal Management 49(1):72-89
https://doi.org/10.1080/08920753.2021.1846155
Improving the IEA approach using principles of open data science Bastille, Kimberly, Sean Hardison, Lynn deWitt, Jennifer Brown, Jameal Samhouri, Sarah Gaichas, Sean Lucey, Kelly Kearney, Ben Best, Scott Cross, Scott Large, and Ellen Spooner Coastal Management 49(1):72-89
2021Bastille
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Global COVID-19 lockdown highlights humans as both threats and custodians of the environment

Bates, Amanda E., et al.
2021
Biological Conservation 263:109175 (18 p.)
https://doi.org/10.1016/j.biocon.2021.109175
Global COVID-19 lockdown highlights humans as both threats and custodians of the environment Bates, Amanda E., et al. Biological Conservation 263:109175 (18 p.)
2021Bates
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Regions of genetic divergence in depth-separated Sebastes rockfish species pairs: Depth as a potential driver of speciation

Behrens, Kristen A., Quinn L. Girasek, Alex Sickler, John Hyde, and Vincent P. Buonaccorsi
2021
Molecular Ecology 30(17):4259-4275
https://doi.org/10.1111/mec.16046
Regions of genetic divergence in depth-separated Sebastes rockfish species pairs: Depth as a potential driver of speciation Behrens, Kristen A., Quinn L. Girasek, Alex Sickler, John Hyde, and Vincent P. Buonaccorsi Molecular Ecology 30(17):4259-4275
2021Behrens
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Cross-sectoral externalities related to natural resources and ecosystem services

Bellanger, Manuel, Robert Fonner, Daniel S. Holland, Gary D. Libecap, Douglas W. Lipton, Pierre Scemama, Cameron Speir, and Olivier Thebaud
2021
Ecological Economics 184:106990 (10 p.)
https://doi.org/10.1016/j.ecolecon.2021.106990
Cross-sectoral externalities related to natural resources and ecosystem services Bellanger, Manuel, Robert Fonner, Daniel S. Holland, Gary D. Libecap, Douglas W. Lipton, Pierre Scemama, Cameron Speir, and Olivier Thebaud Ecological Economics 184:106990 (10 p.)
2021Bellanger
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Biogeochemical processes create distinct isotopic fingerprints to track floodplain rearing of juvenile salmon

Bell-Tilcock, Miranda, Carson A. Jeffres, Andrew L. Rypel, Malte Willmes, Richard A. Armstrong, Peter Holden, Peter B. Moyle, Nann A. Fangue, Jacob V.E. Katz, Ted R. Sommer, J. Louise Conrad, and Rachel C. Johnson
2021
PLoS ONE 16(10):e0257444 (23 p.)
https://doi.org/10.1371/journal.pone.0257444
Biogeochemical processes create distinct isotopic fingerprints to track floodplain rearing of juvenile salmon Bell-Tilcock, Miranda, Carson A. Jeffres, Andrew L. Rypel, Malte Willmes, Richard A. Armstrong, Peter Holden, Peter B. Moyle, Nann A. Fangue, Jacob V.E. Katz, Ted R. Sommer, J. Louise Conrad, and Rachel C. Johnson PLoS ONE 16(10):e0257444 (23 p.)
2021BellTilcock2
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Advancing diet reconstruction in fish eye lenses

Bell-Tilcock, Miranda, Carson A. Jeffres, Andrew L. Rypel, Ted R. Sommer, Jacob V.E. Katz, George Whitman, and Rachel C. Johnson
2021
Methods in Ecology and Evolution 12(3):449-457
https://doi.org/10.1111/2041-210X.13543
Advancing diet reconstruction in fish eye lenses Bell-Tilcock, Miranda, Carson A. Jeffres, Andrew L. Rypel, Ted R. Sommer, Jacob V.E. Katz, George Whitman, and Rachel C. Johnson Methods in Ecology and Evolution 12(3):449-457
2021BellTilcock
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Analysis of digestive tract contents from loggerhead sea turtles Caretta Caretta (Linnaeus, 1758) stranded along the northwest coast of Morocco

Benhardouze, Wafae, Mustapha Aksissou, and Manjula Tiwari
2021
Cahiers de Biologie Marine 62(3):205-215
https://doi.org/10.21411/CBM.A.EA15A5C4
Analysis of digestive tract contents from loggerhead sea turtles Caretta Caretta (Linnaeus, 1758) stranded along the northwest coast of Morocco Benhardouze, Wafae, Mustapha Aksissou, and Manjula Tiwari Cahiers de Biologie Marine 62(3):205-215
2021Benhardouze
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Stable isotope analysis reveals differences in domoic acid accumulation and feeding strategies of key vectors in a California hotspot for outbreaks

Bernstein, Sophie, Rocio I. Ruiz-Cooley, Raphael Kudela, Clarissa R. Anderson, Robin Dunkin, and John C. Field
2021
Harmful Algae 110:102117 (13 p.)
https://doi.org/10.1016/j.hal.2021.102117
Stable isotope analysis reveals differences in domoic acid accumulation and feeding strategies of key vectors in a California hotspot for outbreaks Bernstein, Sophie, Rocio I. Ruiz-Cooley, Raphael Kudela, Clarissa R. Anderson, Robin Dunkin, and John C. Field Harmful Algae 110:102117 (13 p.)
2021Bernstein
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Zero, one or more broods: reproductive plasticity in response to temperature, food, and body size in the live-bearing rosy rockfish Sebastes rosaceus

Beyer, S.G., S.H. Alonzo, and S.M. Sogard
2021
Marine Ecology Progress Series 669:151-173
https://doi.org/10.3354/meps13718
Zero, one or more broods: reproductive plasticity in response to temperature, food, and body size in the live-bearing rosy rockfish Sebastes rosaceus Beyer, S.G., S.H. Alonzo, and S.M. Sogard Marine Ecology Progress Series 669:151-173
2021Beyer
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Trophic ecology of sympatric batoid species (Chondrichthyes: Batoidea) assessed by multiple biogeochemical tracers (δ13C, δ15N and total Hg)

Bezerra, M.F., J.A. Seminoff, G.E. Lemons, D.G. Slotton, K. Watanabe, and C.T. Lai
2021
Environmental Research 199:111398 (12 p.)
https://doi.org/10.1016/j.envres.2021.111398
Trophic ecology of sympatric batoid species (Chondrichthyes: Batoidea) assessed by multiple biogeochemical tracers (δ13C, δ15N and total Hg) Bezerra, M.F., J.A. Seminoff, G.E. Lemons, D.G. Slotton, K. Watanabe, and C.T. Lai Environmental Research 199:111398 (12 p.)
2021Bezerra
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Respiratory capacity is twice as important as temperature in explaining patterns of metabolic rate across the vertebrate tree of life

Bigman, Jennifer S., Leithen K. M'Gonlgle, Nicholas C. Wegner, and Nicholas K. Dulvy
2021
Science Advances 7(19):eabe5163 (11 p.)
https://doi.org/10.1126/sciadv.abe5163
Respiratory capacity is twice as important as temperature in explaining patterns of metabolic rate across the vertebrate tree of life Bigman, Jennifer S., Leithen K. M'Gonlgle, Nicholas C. Wegner, and Nicholas K. Dulvy Science Advances 7(19):eabe5163 (11 p.)
2021Bigman
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Training a generation of avid journal manuscript reviewers

Bograd, Steven J., and Gayle Barbin Zydlewski
2021
Fisheries Oceanography 30(1):1-2
https://doi.org/10.1111/fog.12509
Training a generation of avid journal manuscript reviewers Bograd, Steven J., and Gayle Barbin Zydlewski Fisheries Oceanography 30(1):1-2
2021Bograd
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Estimating economic losses to small-scale fishers from shark conservation: A hedonic price analysis

Booth, Hollie, Dale Squires, Irfan Yulianto, Benaya Simeon, Muhsin, Luky Adrianto, and Eleanor Jane Milner-Gulland
2021
Conservation Science and Practice 3(9):e494 (17 p.)
https://doi.org/10.1111/csp2.494
Estimating economic losses to small-scale fishers from shark conservation: A hedonic price analysis Booth, Hollie, Dale Squires, Irfan Yulianto, Benaya Simeon, Muhsin, Luky Adrianto, and Eleanor Jane Milner-Gulland Conservation Science and Practice 3(9):e494 (17 p.)
2021Booth2
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Bycatch levies could reconcile trade-offs between blue growth and biodiversity conservation

Booth, Hollie, William N.S. Arlidge, Dale Squires, and E.J. Milner-Gulland
2021
Nature Ecology & Evolution 5:715-725
https://doi.org/10.1038/s41559-021-01444-w
Bycatch levies could reconcile trade-offs between blue growth and biodiversity conservation Booth, Hollie, William N.S. Arlidge, Dale Squires, and E.J. Milner-Gulland Nature Ecology & Evolution 5:715-725
2021Booth
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Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries

Boudry, Pierre, Francois Allal, Muhammad L. Aslam, Luca Bargelloni, Tim P. Bean, Sophie Brard-Fudulea, Marine S.O. Brieuc, Federica C.F. Calboli, John Gilbey, Pierrick Haffray, Jean-Baptiste Lamy, Romain Morvezen, Catherine Purcell, Paulo A. Prodohl, Marc Vandeputte, Geoffrey C. Waldbieser, Anna K. Sonesson, and Ross D. Houston
2021
Aquaculture Reports 20:100700 (14 p.)
https://doi.org/10.1016/j.aqrep.2021.100700
Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries Boudry, Pierre, Francois Allal, Muhammad L. Aslam, Luca Bargelloni, Tim P. Bean, Sophie Brard-Fudulea, Marine S.O. Brieuc, Federica C.F. Calboli, John Gilbey, Pierrick Haffray, Jean-Baptiste Lamy, Romain Morvezen, Catherine Purcell, Paulo A. Prodohl, Marc Vandeputte, Geoffrey C. Waldbieser, Anna K. Sonesson, and Ross D. Houston Aquaculture Reports 20:100700 (14 p.)
2021Boudry
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A deepening understanding of animal culture suggests lessons for conservation

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Dynamic thermal corridor may connect endangered loggerhead sea turtles across the Pacific Ocean

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Brownell, Robert L. Jr., and Toshio Kasuya
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Estimates of marine mammal, sea turtle, and seabird bycatch in the California large-mesh drift gillnet fishery: 1990-2019

Carretta, James V.
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U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-654. 72 p.
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U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-646. 389 p.
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U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-643. 157 p.
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Carroll, Gemma, Stephanie Brodie, Rebecca Whitlock, James Ganong, Steven J. Bograd, Elliott Hazen, and Barbara A. Block
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Champion, Curtis, Stephanie Brodie, and Melinda A. Coleman
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Chiu, Jennifer A., Joseph J. Bizzarro, and Richard M. Starr
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Curtis, K. Alexandra, Erin A. Falcone, Gregory S. Schorr, Jeffrey E. Moore, David J. Moretti, Jay Barlow, and Erin Keene
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Marine Mammal Science 37(2):399-419
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Danil, Kerri, Michelle Berman, Elizabeth Frame, Antonella Preti, Spencer E. Fire, Tod Leighfield, Jim Carretta, Melissa L. Carter, and Kathi Lefebvre
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Danil, Kerri, Nicole Beaulieu-McCoy, Sophie Dennison, David Rotstein, Teri Rowles, and Sarah Wilkin
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U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-641. 38 p.
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Del Rio, Annelise M., Gabriella N. Mukai, Benjamin T. Martin, Rachel C. Johnson, Nann A. Fangue, Joshua A. Israel, and Anne E. Todgham
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Dick, E.J., Jason Edwards, and Tien-Shui Tsou
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Fisheries Research 241:106002 (9 p.)
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Winter and Summer biogeography of macrozooplankton community structure in the northern Antarctic Peninsula ecosystem

Dietrich, Kimberly S., Jarrod A. Santora, and Christian S. Reiss
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Ding, Hui, Michael A. Alexander, and Michael G. Jacox
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Straying and life history of adult steelhead in a small California coastal stream revealed by otolith natural tags and genetic stock identification

Donohoe, Christopher J., David E. Rundio, Devon E. Pearse, and Thomas H. Williams
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North American Journal of Fisheries Management 41(3):711-723
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A more comprehensive climate vulnerability assessment framework for fisheries social-ecological systems

Dudley, Peter N., Tanya L. Rogers, Mark M. Morales, Amanda D. Stoltz, Casey J. Sheridan, Anne K. Beulke, Carrie Pomeroy, and Mark H. Carr
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California streaming: Exploring deep-sea coral and sponge assemblages in sunny southern California

Duncan, Elizabeth, Lisa Wooninck, Tom Laidig, Elizabeth Clarke, Abigail Powell, Curt Whitmire, Guy Cochrane, and Chris Caldow
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In: Nicole A. Raineault, Joanne Flanders, and Eric Niiler (guest eds.), New frontiers in ocean exploration: The E/V Nautilus, NOAA Ship Okeanos Explorer, and R.V. Falkor 2020 field season. Oceanography 34(1, supp.):36-37.
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Enhanced monitoring of life in the sea is a critical component of conservation management and sustainable economic growth

Estes, Maurice Jr., Clarissa Anderson, Ward Appeltans, Nic Bax, Nina Bednarsek, Gabrielle Canonico, Samy Djavidnia, Elva Escobar, Peer Fietzek, Marilaure Gregoire, Elliott Hazen, Maria Kavanaugh, Franck Lejzerowicz, Fabien Lombard, Patricia Miloslavich, Klas O. Moller, Jacquomo Monk, Enrique Montes, Hassan Moustahfid, Monica M.C. Muelbert, Frank Muller-Karger, Lindsey E. Peavey Reeves, Erin V. Satterthwaite, Jorn O. Schmidt, Ana M.M. Sequeira, Woody Turner, and Lauren V. Weatherdon
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Fader, Joseph E., Robin W. Baird, Amanda L. Bradford, Daniel C. Dunn, Karin A. Forney, and Andrew J. Read
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Local ecological knowledge supports identification of sea turtle nesting beaches in Panama

Flores, Eric E., Joelbin De La Cruz, Jeffrey A. Seminoff, and Luis Urena
2021
Herpetological Conservation and Biology 16(2):238-250
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Runs of homozygosity in killer whale genomes provide a global record of demographic histories

Foote, Andrew D., Rebecca Hooper, Alana Alexander, Robin W. Baird, Charles Scott Baker, Lisa Ballance, Jay Barlow, Andrew Brownlow, Tim Collins, Rochelle Constantine, Luciano Dalla Rosa, Nicholas J. Davison, John W. Durban, Ruth Esteban, Laurent Excoffier, Sarah L. Fordyce Martin, Karin A. Forney, Tim Gerrodette, M. Thomas P. Gilbert, Christophe Guinet, M. Bradley Hanson, Songhai Li, Michael D. Martin, Kelly M. Robertson, Filipa I.P. Samarra, Renaud de Stephanis, Sara B. Tavares, Paul Tixier, John A. Totterdell, Paul Wade, Jochen B.W. Wolf, Guangyi Fan, Yaolei Zhang, and Phillip A. Morin
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A multidecadal Bayesian trend analysis of harbor porpoise (Phocoena phocoena) populations off California relative to past fishery bycatch

Forney, Karin A., Jeffrey E. Moore, Jay Barlow, James V. Carretta, and Scott R. Benson
2021
Marine Mammal Science 37(2):546-560
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Body growth of North Atlantic right whales (Eubalaena glacialis) revisited

Fortune, Sarah M.E., Michael J. Moore, Wayne L. Perryman, and Andrew W. Trites
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Marine Mammal Science 37(2):433-447
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Body growth of North Atlantic right whales (Eubalaena glacialis) revisited Fortune, Sarah M.E., Michael J. Moore, Wayne L. Perryman, and Andrew W. Trites Marine Mammal Science 37(2):433-447
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Exercise duration and cohort affect variability and longevity of the response to exercise training in California Yellowtail (Seriola dorsalis)

Frank, Laura N., Kevin Stuart, Zachary Skelton, Mark Drawbridge, John R. Hyde, Mary Sue Lowery, and Nicholas G. Wegner
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Aquaculture 540:736684 (13 p.)
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Changes to the structure and function of an albacore fishery reveal shifting social-ecological realities for Pacific Northwest fishermen

Frawley, Timothy H., Barbara A. Muhling, Stephanie Brodie, Mary C. Fisher, Desiree Tommasi, Gwendal Le Fol, Elliott L. Hazen, Stephen S. Stohs, Elena M. Finkbeiner, and Michael G. Jacox
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Fish and Fisheries 22(2):280-297
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Trophic ecology of juvenile green turtles in the Southwestern Atlantic Ocean: insights from stable isotope analysis and niche modelling

Gama, Luciana R., Mariana M.P.B. Fuentes, Tailisi Hoppe Trevizani, Franciane Pellizzari, Garrett E. Lemons, Jeffrey A. Seminoff, and Camila Domit
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Marine Ecology Progress Series 678:139-152
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A comparative review of macromedusae in eastern boundary currents

Gibbons, Mark J., Heidi Skrypzeck, Richard D. Brodeur, Jose M. Riascos, Javier A. Quinones Davila, Cecilia A.F. Grobler, Jean-Paul Roux, John C. Field, Elizabeth A. Daly, Rebecca R. Miller, Verena Ras, Agustin Schiariti, Luciano Chiaverano, Beau M. Tjizoo, Laura Prieto, Hounaida F. Idrissi, and Sergio Palma
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Oceanography and Marine Biology: An Annual Review 59:371-482
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A comparative review of macromedusae in eastern boundary currents Gibbons, Mark J., Heidi Skrypzeck, Richard D. Brodeur, Jose M. Riascos, Javier A. Quinones Davila, Cecilia A.F. Grobler, Jean-Paul Roux, John C. Field, Elizabeth A. Daly, Rebecca R. Miller, Verena Ras, Agustin Schiariti, Luciano Chiaverano, Beau M. Tjizoo, Laura Prieto, Hounaida F. Idrissi, and Sergio Palma Oceanography and Marine Biology: An Annual Review 59:371-482
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Environmental variability and fishing effects on the Pacific sardine fisheries in the Gulf of California

Giron-Nava, Alfredo, Exequiel Ezcurra, Antoine Brias, Enriqueta Velarde, Ethan Deyle, Andres M. Cisneros-Montemayor, Stephan B. Munch, George Sugihara, and Octavio Aburto-Oropeza
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Canadian Journal of Fisheries and Aquatic Sciences 78(5):623-630
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Incorporating animal movement into distance sampling

Glennie, R., S.T. Buckland, R. Langrock, T. Gerrodette, L.T. Ballance, S.J. Chivers, and M.D. Scott
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Journal of the American Statistical Association 116(533):107-115
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Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem

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Molecular Ecology Resources 21(7):2546-2564
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Using change models to envision better applications of animal behavior research in conservation management and beyond

Greggor, Alison L., Oded Berger-Tal, Ronald R. Swaisgood, Steven J. Cooke, Travis L. DeVault, Esteban Fernandez-Juricic, Anne Gienapp, Suzanne Hall, Cameron Hostetter, Megan A. Owen, Shannon Rankin, Kirstie A. Ruppert, John P. Swaddle, and Daniel T. Blumstein
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Geologic variability of conodont strontium isotopic composition quantified by laser ablation multiple collection inductively coupled plasma mass spectrometry

Griffin, Julie M., Isabel P. Montanez, Justin J.G. Glessner, Jitao Chen, and Malte Willmes
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Palaeogeography, Palaeoclimatology, Palaeoecology 568:110308 (11 p.)
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Fish specialize their metabolic performance to maximize bioenergetic efficiency in their local environment: Conspecific comparison between two stocks of Pacific chub mackerel (Scomber japonicus)

Guo, Chenying, Shin-ichi Ito, Michio Yoneda, Hahime Kitano, Hitoshi Kaneko, Megumi Enomoto, Tomoya Aono, Masahiro Nakamura, Takashi Kitagawa, Nicholas C. Wegner, and Emmanis Dorval
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Estimating the abundance of marine mammal populations

Hammond, Philip S., Tessa B. Francis, Dennis Heinemann, Kristy J. Long, Jeffrey E. Moore, Andre E. Punt, Randall R. Reeves, Maritza Sepulveda, Gudjon Mar Sigurdsson, Gisli Vikingsson, Paul R. Wade, Rob Williams, and Alexandre N. Zerbini
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Frontiers in Marine Science 8:735770 (27 p.)
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Marine important bird and biodiversity areas for penguins in Antarctica, targets for conservation action

Handley, Jonathan, Marie-Morgane Rouyer, Elizabeth J. Pearmain, Victoria Warwick-Evans, Katharina Teschke, Jefferson T. Hinke, Heather Lynch, Louise Emmerson, Colin Southwell, Gary Griffith, Cesar A. Cardenas, Aldina M.A. Franco, Phil Trathan, and Maria P. Dias
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Frontiers in Marine Science 7:602972 (17 p.)
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Citizen-sourced sightings and underwater photography reveal novel insights about green sea turtle distribution and ecology in southern California

Hanna, Megan E., Erin M. Chandler, Brice X. Semmens, Tomoharu Eguchi, Garrett E. Lemons, and Jeffrey A. Seminoff
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Frontiers in Marine Science 8:671061 (14 p.)
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Distribution patterns of fish and invertebrates from summer salmon surveys in the central California Current System 2010–2015

Harding, Jeffrey, Edward Dick, Nathan Mantua, Brian Wells, Arnold Ammann, and Sean Hayes
2021
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-645. 72 p.
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Where did they not go? Considerations for generating pseudo-absences for telemetry-based habitat models

Hazen, Elliott L., Briana Abrahms, Stephanie Brodie, Gemma Carroll, Heather Welch, and Steven J. Bograd
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Movement Ecology 9:5 (13 p.)
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The NOAA Pacific Bluefin Tuna Port Sampling Program, 2014-2019

Heberer, Liana N., and Owyn E. Snodgrass
2021
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-651. 50 p.
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The NOAA Southwest Fisheries Science Center Cooperative Billfish Tagging Program operations and database

Heberer, Liana N., James A. Wraith, Suzanne Kohin, Yuhong Gu, Nicole Nasby-Lucas, and Heidi Dewar
2021
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-640. 46 p.
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Successful long-distance breeding range expansion of a top marine predator

Henry, Robert William III, Scott A. Shaffer, Michelle Antolos, Maria Felix-Lizarraga, David G. Foley, Elliott L. Hazen, Yann Tremblay, Daniel P. Costa, Bernie R. Tershy, and Donald A. Croll
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Frontiers in Ecology and Evolution 9:620103 (16 p.)
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