NOAA FISHERIES

Drivers of subsurface deoxygenation in the southern California Current System Evans, Natalya, Isaac D. Schroeder, Mercedes Pozo Buil, Michael G. Jacox, and Steven J. Bograd Geophysical Research Letters 47(21):e2020GL089274

Mapping the bacterial metabolic niche space Fahimipour, Ashkaan K., and Thilo Gross Nature Communications 11:4887 (8 p.)

Evaluating the power of photogrammetry for monitoring killer whale body condition Fearnbach, Holly, John W. Durban, Lance G. Barrett-Lennard, David K. Ellifrit, and Kenneth C. Balcomb III Marine Mammal Science 36(1):359-364

Cryptic lives of conspicuous animals: Otolith chemistry chronicles life histories of coastal lagoon fishes Feyrer, Frederick, Matthew Young, Darren Fong, Karin Limburg, and Rachel Johnson Frontiers in Marine Science 7:417 (9 p.)

Krill hotspot formation and phenology in the California Current Ecosystem Fiechter, Jerome, Jarrod A. Santora, Francisco Chavez, Devon Northcott, and Monique Messie Geophysical Research Letters 47(13):e2020GL088039 (10 p.)

Thermal and habitat suitability for anadromous salmonids in the dammed and inaccessible Upper Mainstem Eel River subbasin in the Eel River Basin, California FitzGerald, Alyssa, David Boughton, Joshua Fuller, Sara John, Ben Martin, Lee Harrison, and Nate Mantua NOAA National Marine Fisheries Service, Southwest Fisheries Science Center, Santa Cruz, California. 51 p.

Proceedings of the 2019 Trinational Sardine and Small Pelagics Forum (December 5-6, 2019, La Jolla, California, USA) Flores, Stephanie (ed.) U.S. Department of Commerce, NOAA Southwest Fisheries Science Center, Administrative Report LJ-20-01. 37 p.

A new maximum size for the family Nomeidae and the third record of a longfin cigarfish, Cubiceps paradoxus (Stromateoidei: Nomeidae) from California, USA Frable, Benjamin W., Merit H. Mccrea, Milton S. Love, and Matthew T. Craig Journal of Fish Biology 97(5):1573-1575

Detections of whale vocalizations by simultaneously deployed bottom-moored and deep-water mobile autonomous hydrophones Fregosi, Selene, Danielle V. Harris, Haruyoshi Matsumoto, David K. Mellinger, Jay Barlow, Simone Baumann-Pickering, and Holger Klinck Frontiers in Marine Science7:721 (18 p.)

The advantages of diving deep: Fin whales quadruple their energy intake when targeting deep krill patches Friedlaender, Ari S., Matthew T. Bowers, David Cade, Elliott L. Hazen, Alison K. Stimpert, Ann N. Allen, John Calambokidis, James Fahlbusch, Paolo Segre, Fleur Visser, Brandon L. Southall, and Jeremy A. Goldbogen Functional Ecology 34(2):497-506

Towards a global understanding of the drivers of marine and terrestrial biodiversity Gagne, Tyler O., Gabriel Reygondeau, Clinton N. Jenkins, Joseph O. Sexton, Steven J. Bograd, Elliott L. Hazen, and Kyle S. Van Houtan PLoS ONE 15(2):e0228065 (17 p.)

Blubber steroid hormone profiles as indicators of physiological state in free-ranging common bottlenose dolphins (Tursiops truncatus) Galligan, Thomas M., Ashley S.P. Boggs, Brian C. Balmer, Teri Rowles, Cynthia R. Smith, Forrest Townsend, Randall S. Wells, Nicholas M. Kellar, Eric S. Zolman, and Lori H. Schwacke Comparative Biochemistry and Physiology A 239:110583 (11 p.)

Characterizing deepwater oxygen variability and seafloor community responses using a novel autonomous lander Gallo, Natalya D., Kevin Hardy, Nicholas C. Wegner, Ashley Nicoll, Haleigh Yang, and Lisa A. Levin Biogeosciences 17(14):3943-3960

Hawaiian hawksbills: a distinct and isolated nesting colony in the Central North Pacific Ocean revealed by mitochondrial DNA Gaos, Alexander R., Erin L. LaCasella, Lauren Kurpita, George Balazs, Stacy Hargrove, Cheryl King, Hannah Bernard, T. Todd Jones, and Peter H. Dutton Conservation Genetics 21(4):771-783

Fast behavioral feedbacks make ecosystems sensitive to pace and not just magnitude of anthropogenic environmental change Gil, Michael A., Marissa L. Baskett, Stephan B. Munch, and Andrew M. Hein Proceedings of the National Academy of Sciences of the United States of America 117(41):25580-25589

Evaluating different spatial scales of forage item availability to determine diet selection of juvenile green turtles (Chelonia mydas) Gillis, Anthony J., Natalie E. Wildermann, Simona A. Cerlani, Jeffrey A. Seminoff, and Mariana M.P.B. Fuentes Marine Biology 167:170 (17 p.)

Circularity in fisheries data weakens real world prediction Giron-Nava, Alfredo, Stephan B. Munch, Andrew F. Johnson, Ethan Deyle, Chase C. James, Erik Saberski, Gerald M. Pao, Octavio Aburto-Oropeza, George Sugihara Scientific Reports 10:6977 (6 p.)

Detection and classification of narrow-band high frequency echolocation clicks from drifting recorders Griffiths, Emily T., Frederick Archer, Shannon Rankin, Jennifer L. Keating, Eric Keen, Jay Barlow, and Jeffrey E. Moore Journal of the Acoustical Society of America 147(5):3511-3522

Blooms of a key grazer in the Southern Ocean — An individual-based model of Salpa thompsoni Groeneveld, Jurgen, Uta Berger, Natasha Henschke, Evgeny A. Pakhomov, Christian S. Reiss, and Bettina Meyer Progress in Oceanography 185:102339 (10 p.)

Modern models of trophic meta-communities Gross, Thilo, Korinna T. Allhoff, Bernd Blasius, Ulrich Brose, Barbara Drossel, Ashkaan K. Fahimipour, Christian Guill, Justin D. Yeakel, and Fanqi Zeng Philosphical Transactions of the Royal Society B 375(1814):20190455 (12 p.)

Spatio-temporal analyses of marine predator diets from data-rich and data-limited systems Gruss, Arnaud, James T. Thorson, Gemma Carroll, Elizabeth L. Ng, Kirstin K. Holsman, Kerim Aydin, Stan Kotwicki, Hem N. Morzaria-Luna, Cameron H. Ainsworth, and Kevin A. Thompson Fish and Fisheries 21(4):718-739

Vaquitas (Phocoena sinus) continue to die from bycatch not pollutants Gulland, Frances, Kerri Danil, Jennie Bolton, Gina Ylitalo, Roberto Sanchez Okrucky, Francisco Rebolledo, Christian Alexander-Beloch, Robert L. Brownell, Sarah Mesnick, Kathi Lefebvre, Cynthia R. Smith, Peter Owen Thomas, and Lorenzo Rojas-Bracho Veterinary Record 187:e51 (4 p.)

Metabolic measurements and parameter estimations for bioenergetics modelling of Pacific Chub Mackerel Scomber japonicus Guo, Chenying, Shin-ichi Ito, Nicholas C. Wegner, Laura N. Frank, Emmanis Forval, Kathryn A. Dickson, and Dane H. Klinger Fisheries Oceanography 29(3):215-226

Oceanographic drivers of petrale sole recruitment in the California Current Ecosystem Haltuch, Melissa A., Nick Tolimieri, Qi Lee, and Michael G. Jacox Fisheries Oceanography 29(2):122-136

Finding crush: Environmental DNA analysis as a tool for tracking the green sea turtle Chelonia mydas in a marine estuary Harper, Kirsten J., Kelly D. Goodwin, Lynsey R. Harper, Erin L. LaCasella, Amy Frey, and Peter H. Dutton Frontiers in Marine Science 6:810 (13 p.)

Assessing the potential for spectrally based remote sensing of salmon spawning locations Harrison, Lee R., Carl J. Legleiter, Brandon T. Overstreet, Tom W. Bell, and John Hannon River Research and Applications 36(8):1618-1632

The importance of long-term ecological time series for integrated ecosystem assessment and ecosystem-based management Harvey, Chris J., Jennifer L. Fisher, Jameal F. Samhouri, Gregory D. Williams, Tessa B. Francis, Kym C. Jacobson, Yvonne L. deReynier, Mary E. Hunsicker, and Newell Garfield Progress in Oceanography 188:102418 (11 p.)

Ecosystem status report of the California Current for 2019-2020: A summary of ecosystem indicators compiled by the California Current Integrated Ecosystem Assessment Team (CCIEA) Harvey, Chris, Newell (Toby) Garfield, Gregory Williams, Nick Tolimieri, Kelly Andrews, Katie Barnas, Eric Bjorkstedt, Steven Bograd, Jerry Borchert, Caren Braby, Richard Brodeur, Brian Burke, Jason Cope, Audrey Coyne, David Demer, Lynn deWitt, John Field, Jennifer Fisher, Peter Frey, Thomas Good, Christina Grant, Correigh Greene, Elliott Hazen, Daniel Holland, Matthew Hunter, Kym Jacobson, Michael Jacox, Jaime Jahncke, Christy Juhasz, Isaac Kaplan, Stephen Kasperski, Su Kim, Dan Lawson, Andrew Leising, Alex Manderson, Nate Mantua, Sharon Melin, Rebecca Miller, Stephanie Moore, Cheryl Morgan, Barbara Muhling, Stuart Munsch, Karma Norman, Julia Parrish, Amanda Phillips, Roxanne Robertson, Dan Rudnick, Keith Sakuma, Jameal Samhouri, Jarrod Santora, Isaac Schroeder, Samantha Siedlecki, Kayleigh Somers, Beckye Stanton, Kevin Stierhoff, William Sydeman, Andrew Thompson, Nick Tolimieri, Duy Trong, Pete Warzybok, Curt Whitmire, Brian Wells, Margaret Williams, Thomas Williams, Jeannette Zamon, Samantha Zeman, Vanessa Zubkousky-White, and Juan Zwolinski U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-160. 80 p.

California Current Integrated Ecosystem Assessment (CCIEA): California Current Ecosystem status report, 2020 Harvey, Chris, Toby Garfield, Greg Williams, and Nick Tolimieri (eds.) A report of the NOAA CCIEA Team to the Pacific Fishery Management Council. 77 p.

Information limitation and the dynamics of coupled ecological systems Hein, Andrew M., and Benjamin T. Martin Nature Ecology and Evolution 4(1):82-90

An algorithmic approach to natural behavior Hein, Andrew M., Douglas L. Altshuler, David E. Cade, James C. Liao, Benjamin T. Martin, and Graham K. Taylor Current Biology 30(11):R663-R675

Deep-sea coral and sponge taxa increase demersal fish diversity and the probability of fish presence Henderson, Mark J., David D. Huff, and Mary M. Yoklavich Frontiers in Marine Science 7:593844 (19 p.)

Report on the California Current Ecosystem Survey (CCES): Cetacean and seabird data collection efforts, June 26 - December 4, 2018 Henry, A.E., J.E. Moore, J. Barlow, J. Calambokidis, L.T. Ballance, L. Rohas-Bracho, and J. Urban Ramirez U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-636. 38 p.

Assessing cetacean populations in the Mariana Archipelago: A summary of data and analyses arising from Pacific Islands Fisheries Science Center surveys from 2010 to 2019 Hill, Marie C., Erin M. Oleson, Amanda L. Bradford, Karen K. Martien, Debbie Steel, and C. Scott Baker U.S. Department of Commerce, NOAA Technical Memorandum NMFS-PIFSC-108. 84 p.

Reference points for predators will progress ecosystem-based management of fisheries Hill, Simeon L., Jefferson Hinke, Sophie Bertrand, Lowell Fritz, Robert W. Furness, James N. Ianelli, Matthew Murphy, Ricardo Oliveros-Ramos, Lorien Pichegru, Rowland Sharp, Richard A. Stillman, Peter J. Wright, and Norman Ratcliffe Fish and Fisheries 21(2):368-378

Tracking of marine predators to protect Southern Ocean ecosystems Hindell, Mark A., Ryan R. Reisinger, Yan Ropert-Coudert, Luis A. Huckstadt, Philip N. Trathan, Horst Bornemann, Jean-Benoit Charrassin, Steven L. Chown, Daniel P. Costa, Bruno Danis, Mary-Anne Lea, David Thompson, Leigh G. Torres, Anton P. Van de Putte, Rachael Alderman, Virginia Andrews-Goff, Ben Arthur, Grant Ballard, John Bengtson, Marthan N. Bester, Arnoldus Schytte Blix, Lars Boehme, Charles-Andre Bost, Peter Boveng, Jaimie Cleeland, Rochelle Constantine, Stuart Corney, Robert J.M. Crawford, Luciano Dalla Rosa, P.J. Nico de Bruyn, Karine Delord, Sebastien Descamps, Mike Double, Louise Emmerson, Mike Fedak, Ari Friedlaender, Nick Gales, Michael E. Goebel, Kimberly T. Goetz, Christophe Guinet, Simon D. Goldsworthy, Rob Harcourt, Jefferson T. Hinke, Kerstin Jerosch, Akiko Kato, Knowles R. Kerry, Roger Kirkwood, Gerald L. Kooyman, Kit M. Kovacs, Kiernan Lawton, Andrew D. Lowther, Christian Lydersen, Phil O'B. Lyver, Azwianewi B. Makhado, Maria E.I. Marquez, Birgitte I. McDonald, Clive R. McMahon, Monica Muelbert, Dominik Nachtsheim, Keith W. Nicholls, Erling S. Nordoy, Silvia Olmastroni, Richard A. Phillips, Pierre Pistorius, Joachim Plotz, Klemens Putz, Norman Ratcliffe, Peter G. Ryan, Mercedes Santos, Colin Southwell, Iain Staniland, Akinori Takahashi, Arnaud Tarroux, Wayne Trivelpiece, Ewan Wakefield, Henri Weimerskirch, Barbara Wienecke, Jose C. Xavier, Simon Wotherspooon, Ian D. Jonsen, and Ben Raymond Nature 580(7801):87-92

Acute bottlenecks to the survival of juvenile Pygoscelis penguins occur immediately after fledging Hinke, Jefferson T., George M. Watters, Christian S. Reiss, Jarrod A. Santora, and M. Mercedes Santos Biology Letters 16(12):20200645 (6 p.)

Fostering global science networks in a post-COVID-19 world Hobday, Alistair J., Carol Robinson, Eugene J. Murphy, Alice Newton, Marion Glaser, and Stephanie Brodie Oceanography 33(4):9-10

Publishing and peer reviewing as indicators of the impact of COVID-19 on the productivity of the aquatic science community Hobday, Alistair J., Howard I. Browman, and Steven J. Bograd ICES Journal of Marine Science 77(7-8):2439-2444

Population survey showing hope for population recovery of the critically endangered Yangtze finless porpoise Huang, Jie, Zhigang Mei, Mao Chen, Yi Han, Xinqiao Zhang, Jeffrey E. Moore, Xiujiang Zhao, Yujiang Hao, Kexiong Wang, and Ding Wang Biological Conservation 241:108315 (9 p.)

In qualified praise of Captain F.D. Maxwell: A precis of Maxwell's 1904 report on the Turtle-Banks of the Irrawaddy Division of Burma (Myanmar) Hykle, Douglas, Maung Maung Lwin, Manjula Tiwari, and David Wm. Owens Herpetological Conservation and Biology 15(2):478-497

Habitat modeling of Irrawaddy dolphins (Orcaella brevirostris) in the eastern Gulf of Thailand Jackson-Ricketts, Justine, Chalatip Junchompoo, Ellen M. Hines, Elliott L. Hazen, Louisa S. Ponnampalam, Anoukchika Ilangakoon, and Somchai Monanunsap Ecology and Evolution 10(6):2778-2792

Seasonal-to-interannual prediction of North American coastal marine ecosystems: Forecast methods, mechanisms of predictability, and priority developments Jacox, Michael G., Michael A. Alexander, Samantha Siedlecki, Ke Chen, Young-Oh Kwon, Stephanie Brodie, Ivonne Ortiz, Desiree Tommasi, Matthew J. Widlansky, Daniel Barrie, Antonietta Capotondi, Wei Cheng, Emanuele Di Lorenzo, Christopher Edwards, Jerome Fiechter, Paula Fratantoni, Elliott L. Hazen, Albert J. Hermann, Arun Kumar, Arthur J. Miller, Douglas Pirhalla, Mercedes Pozo Buil, Sulagna Ray, Scott C. Sheridan, Aneesh Subramanian, Philip Thompson, Lesley Thorne, Hariharasubramanian Annamalai, Kerim Aydin, Steven J. Bograd, Roger B. Griffis, Kelly Kearney, Hyemi Kim, Annarita Mariotti, Mark Merrifield, and Ryan Rykaczewski Progress in Oceanography 183:102307 (23 p.)

Thermal displacement by marine heatwaves Jacox, Michael G., Michael A. Alexander, Steven J. Bograd, and James D. Scott Nature 584(7819):82-86

Abundance and trends of Indo-Pacific finless porpoises (Neophocaena phocaenoides) in Hong Kong waters, 1996-2019 Jefferson, Thomas A., and Jeffrey E. Moore Frontiers in Marine Science 7:574381 (12 p.)

Mobility and its sensitivity to fitness differences determine consumer-resource distributions Jiao, Jing, Louise Riotte-Lambert, Sergei S. Pilyugin, Michael A. Gil, and Craig W. Osenberg Royal Society Open Science 7:200247 (11 p.)

Lifetime chronicles of selenium exposure linked to deformities in an imperiled migratory fish Johnson, Rachel Cathleen, A. Robin Stewart, Karin E. Limburg, Rong Huang, Dennis Cocherell, and Frederick Feyrer Environmental Science and Technology 54(5):2892-2901

Behavioral responses of satellite tracked Blainville's beaked whales (Mesoplodon densirostris) to mid-frequency active sonar Joyce, Trevor W., John W. Durban, Diane E. Claridge, Charlotte A. Dunn, Leigh S. Hickmott, Holly Fearnbach, Karin Dolan, and David Moretti Marine Mammal Science 36(1):29-46

Estimating abundance of Risso's dolphins using a hierarchical Bayesian habitat model: A framework for monitoring stocks of animals inhabiting a dynamic ocean environment Kanaji, Yu, and Tim Gerrodette Deep Sea Research II 175:104699

Common thresher shark Alopias vulpinus movement: Bayesian inference on a data-limited species Kinney, Michael J., Dovi Kacev, Tim Sippel, Heidi Dewar, and Tomaharu Eguchi Marine Ecology Progress Series 639:155-167

Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2019 run Klamath River Technical Team Klamath River Technical Team. 21 p.

Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2020 season Klamath River Technical Team Klamath River Technical Team. 30 p.

What's the catch? Profiling the benefits and costs associated with marine protected areas and displaced fishing in the Scotia Sea Klein, Emily S, and George M. Watters PLOS ONE 15(8):e0237425 (24 p.)

Comparing feedback and spatial approaches to advance ecosystem-based fisheries management in a changing Antarctic Klein, Emily S., and George M. Watters PLoS ONE 15(9):e0231954 (22 p.)

Variability in age of a Southern Ocean myctophid (Gymnoscopelus nicholsi) derived from scat-recovered otoliths Klemmedson, Angela D., Christian S. Reiss, Michael E. Goebel, Ronald S. Kaufmann, Emmanis Dorval, Tomasz B. Linkowski, and Renato Borras-Chavez Marine Ecology Progress Series 633:55-69

Leopard seal diets in a rapidly warming polar region vary by year, season, sex, and body size Krause, Douglas J., Michael E. Goebel, and Carolyn M. Kurle BMC Ecology 20:32 (15 p.)

Identification of shared spatial dynamics in temperature, salinity, and ichthyoplankton community diversity in the California Current System with empirical dynamic modeling Kuriyama, Peter T., George Sugihara, Andrew R. Thompson, and Brice X. Semmens Frontiers in Marine Science 7:557940 (17 p.)

Assessment of the Pacific sardine resource in 2020 for U.S. management in 2020-2021 Kuriyama, Peter T., Juan P. Zwolinski, Kevin T. Hill, and Paul R. Crone U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-628. 171 p.

Biological parameters of the High-Antarctic icefish, Cryodraco antarcticus (Channichthyidae) from the South Shetland Islands La Mesa, Mario, Federico Cali, Emilio Riginella, Carlotta Mazzoldi, and Christopher D. Jones Polar Biology 43:143-155

Ancestral genetic variation in phenotypic plasticity underlies rapid evolutionary changes in resurrected populations of waterfleas Landy, J. Alex, Alixander Oschmann, Stephan B. Munch, and Matthew R. Walsh Proceedings of the National Academy of Sciences of the United States of America 117(51):32535-32544

Enhanced, coordinated conservation efforts required to avoid extinction of critically endangered Eastern Pacific leatherback turtles Laud OPO Network Scientific Reports 10:4772 (14 p.)

Movements, diving behaviour and diet of type-C killer whales (Orcinus orca) in the Ross Sea, Antarctica Lauriano, Giancarlo, Enrico Pirotta, Trevor Joyce, Robert L. Pitman, Asuncion Borrell, and Simone Panigada Aquatic Conservation 30(12):2428-2440

Resolving fine-scale population structure and fishery exploitation using sequenced microsatellites in a northern fish Layton, Kara K.S., Brian Dempson, Paul V.R. Snelgrove, Steven J. Duffy, Amber M. Messmer, Ian G. Paterson, Nicholas W. Jeffery, Tony Kess, John B. Horne, Sarah J. Salisbury, Daniel E. Ruzzante, Paul Bentzen, David Cote, Cameron M. Nugent, Moira M. Ferguson, John S. Leong, Ben F. Koop, and Ian R. Bradbury Evolutionary Applications 13(5):1055-1068

Thermal transgenerational effects remain after two generations Lee, Who-Seung, Santiago Salinas, Young-Rog Lee, Jo Anne Siskidis, Marc Mangel, and Stephan B. Munch Ecology and Evolution 10(20):11296-11303

Disease in Central Valley salmon: status and lessons from other systems Lehman, Brendan M., Rachel C. Johnson, Mark Adkison, Oliver T. Burgess, Richard E. Connon, Nann A. Fangue, J. Scott Foott, Sascha L. Hallett, Beatriz Martinez-Lopez, Kristina M. Miller, Maureen K. Purcell, Nicholas A. Som, Pablo Valdes Donoso, and Alison L. Collins San Francisco Estuary and Watershed Science 18(3):2 (31 p.)

Nitrogen isotope fractionation of amino acids from a controlled study on the Green Turtle (Chelonia mydas): expanding beyond Glx/Phe for trophic position Lemons, Garrett E., Rebecca L. Lewison, Jeffrey A. Seminoff, Christina M. Coppenrath, and Brian N. Popp Marine Biology 167(10):149 (13 p.)

Mechanisms of acid-base regulation following respiratory alkalosis in red drum (Sciaenops ocellatus) Lonthair, Joshua, Angelina M. Dichiera, and Andrew J. Esbaugh Compartive Biochemistry and Physiology A 250:110779

Multiple-threats analysis for loggerhead sea turtles in the southwest Atlantic Ocean Lopez-Mendilaharsu, Milagros, Bruno Giffoni, Danielle Monteiro, Laura Prosdocimi, Gabriela M. Velez-Rubio, Alejandro Fallabrino, Andres Estrades, Alexsandro Santana dos Santos, Paulo H. Lara, Thais Pires, Manjula Tiwari, Alan B. Bolten, and Maria Angela Marcovaldi Endangered Species Research 41:183-196

The economic contribution of marine angler expenditures on fishing trips in the United States 2017 Lovell, Sabrina J., James Hilger, Emily Rollins, Noelle A. Olsen, and Scott Steinback NOAA Technical Memorandum NMFS-F/SPO-201

Winter surveys at the Channel Islands and Point Conception reveal population growth of northern elephant seals and residence counts of other pinnipeds Lowry, Mark S., Elizabeth M. Jaime, Stephanie E. Nehasil, Amy Betcher, and Richard Condit U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-627. 68 p.

Measurements and regressions of otoliths, cephalopod beaks, and other prey hard parts used to reconstruct California Current predator diet composition Lowry, Mark S., K. Alexandra Curtis, and Christiana M. Boerger U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-637. 33 p.

Oversummer growth and survival of juvenile coho salmon (Oncorhynchus kisutch) across a natural gradient of stream water temperature and prey availability: an in situ enclosure experiment Lusardi, Robert A., Bruce G. Hammock, Carson A. Jeffres, Randy A. Dahlgren, and Joseph D. Kiernan Canadian Journal of Fisheries and Aquatic Sciences 77(2):413-424

Protecting nests of the Critically Endangered South Pacific loggerhead turtle Caretta caretta from goanna Varanus spp. predation Madden Hof, Christine A., Gabriela Shuster, Nev Mclachlan, Bev Mclachlan, Saranne Giudice, Colin Limpus, and Tomoharu Eguchi Oryx 54(3):323-331

Matching Vessel Monitoring System data to trawl logbook and fish ticket data for the Pacific groundfish fishery Mamula, Aaron, Alice Thomas-Smyth, Cameron Speir, Rosemary Kosaka, and Don Pearson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-623. 76 p.

Progress report on genetic assignment of humpback whales from the California-Oregon feeding aggregation to the mainland Mexico and Central America wintering grounds Martien, Karen K., Brittany L. Hancock-Hanser, Morgane Lauf, Barbara L. Taylor, Frederick I. Archer, Jorge Urban, Debbie Steel, C. Scott Baker, and John Calambokidis U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-635. 18 p.

The biophysical basis of thermal tolerance in fish eggs Martin, Benjamin T., Peter N. Dudley, Neosha S. Kashef, David M. Stafford, William J. Reeder, Daniele Tonina, Annelise M. Del Rio, J. Scott Foott, and Eric M. Danner Proceedings of the Royal Society B 287(1937):20201550 (9 p.)

Assessing the population-level impacts of North Pacific loggerhead and western Pacific leatherback turtle interactions in the Hawaii-based shallow-set longline fishery Martin, Summer L., Zachary Siders, Tomoharu Eguchi, Brian Langseth, Annie Yau, Jason Baker, Robet Ahrens, and T. Todd Jones U.S. Department of Commerce, NOAA Technical Memorandum NMFS-PIFSC-95. 172 p.

Diet segregation in Adelie penguins: some individuals attempt to overcome colony-induced and annual foraging challenges Massaro, Melanie, David G. Ainley, Jarrod A. Santora, Petra Quillfeldt, Amelie Lescroel, Amy Whitehead, Arvind Varsani, Grant Ballard, and Phil O'B. Lyver Marine Ecology Progress Series 645:205-218

Effects of hypoxia on the behavior and physiology of kelp forest fishes Mattiasen, Evan G., Neosha S. Kashef, David M. Stafford, Cheryl A. Logan, Susan M. Sogard, Eric P. Bjorkstedt, and Scott L. Hamilton Global Change Biology 26(6):3498-3511

The need for spatio-temporal modeling to determine catch-per-unit effort based on indices of abundance and associated composition data for inclusion in stock assessment models Maunder, Mark N., James T. Thorson, Haikun Xu, Ricardo Oliveros-Ramos, Simon D. Hoyle, Laura Tremblay-Boyer, Hui Hua Lee, Mikihiko Kai, Shui-Kai Chang, Toshihide Kitakado, Christoffer M. Albertsen, Carolina V. Minte-Vera, Cleridy E. Lennert-Cody, Alexandre M. Aires-da-Silva, and Kevin R. Piner Fisheries Research 229:105594

Positive selection and inactivation in the vision and hearing genes of cetaceans McGowen, Michael R., Georgia Tsagkogeorga, Joseph Williamson, Phillip A. Morin, and Stephen J. Rossiter Molecular Biology and Evolution 37(7):2069-2083

Phylogenomic resolution of the cetacean tree of life using target sequence capture McGowen, Michael R., Georgia Tsagkogeorga, Sandra Alvarez-Carretero, Mario dos Reis, Monika Struebig, Robert Deaville, Paul D. Jepson, Simon Jarman, Andrea Polanowski, Phillip A. Morin, and Stephen J. Rossiter Systematic Biology 69(3):479-501

A first step for the Yangtze Mei, Zhigang, Peilin Cheng, Kexiong Wang, Qiwei Wei, Jay Barlow, and Ding Wang Science 367(6484):1314

Trophic ecology of hawksbill turtles (Eretmochelys imbricata) in Golfo Dulce, Costa Rica: integrating esophageal lavage and stable isotope (δ13C, δ15N) analysis Mendez-Salgado, Estefania, Didiher Chacon-Chaverri, Luis G. Fonseca, and Jeffrey A. Seminoff Latin American Journal of Aquatic Research 48(1):114-130

Limitations of active removal to manage predatory fish populations Michel, Cyril J., Joseph M. Smith, Brendan M. Lehman, Nicholas J. Demetras, David D. Huff, Patricia L. Brandes, Joshua A. Israel, Thomas P. Quinn, and Sean A. Hayes North American Journal of Fisheries Management 40(1):3-16

Fish predation on a landscape scale Michel, Cyril J., Mark J. Henderson, Christopher M. Loomis, Joseph M. Smith, Nicholas J. Demetras, Ilysa S. Iglesias, Brendan M. Lehman, and David D. Huff Ecosphere 11(6):e03168 (18 p.)

Bioavailable soil and rock strontium isotope data from Israel Moffat, Ian, Rachel Rudd, Malte Willmes, Graham Mortimer, Les Kinsley, Linda McMorrow, Richard Armstrong, Maxime Aubert, and Rainer Grun Earth System Science Data 12:3641-3652

NMFS Southwest Fisheries Science Center: Draft agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee Monk, Melissa (ed.), John Field, Tom Laidig, Nick Wegner, and William Watson In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee, p. 279-294. Pacific States Marine Fisheries Commission.

Defining the stock structures of key commercial tunas in the Pacific Ocean II: Sampling considerations and future directions Moore, Bradley R., Tim Adams, Valerie Allain, Johann D. Bell, Mark Bigler, Don Bromhead, Sangaa Clark, Campbell Davies, Karen Evans, Ueta Faasili Jr., Jessica Farley, Mark Fitchett, Peter M. Grewe, John Hampton, John Hyde, Bruno Leroy, Antony Lewis, Anne Lorrain, Jed I. Macdonald, Amandine D. Marie, Carolina Minte-Vera, Janice Natasha, Simon Nicol, Pablo Obregon, Thomas Peatman, Carlo Pecoraro, N. Bradley Phillip Jr., Graham M. Pilling, Ciro Rico, Caroline Sanchez, Robert Scott, Joe Scutt Phillips, Brian Stockwell, Laura Tremblay-Boyer, Thomas Usu, Ashley J. Williams, and Neville Smith Fisheries Research 230:105524 (17 p.)

Building genomic infrastructure: Sequencing platinum-standard reference-quality genomes of all cetacean species Morin, Phillip A., Alana Alexander, Mark Blaxter, Susana Caballero, Olivier Fedrigo, Michael C. Fontaine, Andrew D. Foote, Shigehiro Kuraku, Brigid Maloney, Morgan L. McCarthy, Michael R. McGowen, Jacquelyn Mountcastle, Mariana F. Nery, Morten Tange Olsen, Patricia E. Rosel, and Erich D. Jarvis Marine Mammal Science 36(4):1356-1366

Tunas and billfishes of the world: Bruce Collette, and John Graves, with illustrations by Val Kells. Johns Hopkins University Press, Baltimore, Maryland, 2019. [book review] Muhling, Barbara Fisheries 45(2):107

Predictability of species distributions deteriorates under novel environmental conditions in the California Current System Muhling, Barbara A., Stephanie Brodie, James A. Smith, Desiree Tommasi, Carlos F. Gaitan, Elliott L. Hazen, Michael G. Jacox, Toby D. Auth, and Richard D. Brodeur Frontiers in Marine Science 7:589 (22 p.)

Frequently asked questions about nonlinear dynamics and empirical dynamic modelling Munch, Stephan B., Antoine Brias, George Sugihara, and Tanya L. Rogers ICES Journal of Marine Science 77(4):1463-1479

Science for integrative management of a diadromous fish stock: interdependencies of fisheries, flow, and habitat restoration Munsch, Stuart H., Correigh M. Greene, Rachel C. Johnson, William H. Satterthwaite, Hiroo Imaki, Patricia L. Brandes, and Michael R. O'Farrell Canadian Journal of Fisheries and Aquatic Sciences 77(9):1487-1504

Potential for ecological nonlinearities and thresholds to inform Pacific salmon management Munsch, Stuart H., Kelly S. Andrews, Lisa G. Crozier, Robert Fonner, Jennifer L. Gosselin, Correigh M. Greene, Chris J. Harvey, Jessica I. Lundin, George R. Pess, Jameal F. Samhouri, and William H. Satterthwaite Ecosphere 11(12):e03302 (21 p.)

Effects of body size on estimation of mammalian area requirements Noonan, Michael J., Christen H. Fleming, Marlee A. Tucker, Roland Kays, Autumn-Lynn Harrison, Margaret C. Crofoot, Briana Abrahms, Susan C. Alberts, Abdullahi H. Ali, Jeanne Altmann, Pamela Castro Antunes, Nina Attias, Jerrold L. Belant, Dean E. Beyer Jr., Laura R. Bidner, Niels Blaum, Randall B. Boone, Damien Caillaud, Rogerio Cunha de Paula, J. Antonio de la Torre, Jasja Dekker, Christopher S. DePerno, Mohammad Farhadinia, Julian Fennessy, Claudia Fichtel, Christina Fischer, Adam Ford, Jacob R. Goheen, Rasmus W. Havmoller, Ben T. Hirsch, Cindy Hurtado, Lynne A. Isbell, Rene Janssen, Florian Jeltsch, Petre Kaczensky, Yayoi Kaneko, Peter Kappeler, Anjan Katna, Matthew Kauffman, Flavia Koch, Abhijeet Kulkarni, Scott LaPoint, Peter Leimgruber, David W. Macdonald, A. Catherine Markham, Laura McMahon, Katherine Mertes, Christopher E. Moorman, Ronaldo G. Morato, Alexander M. Mossbrucker, Guilherme Mourao, David O'Connor, Luiz Gustavo R. Oliveira-Santos, Jennifer Pastorini, Bruce D. Patterson, Janet Rachlow, Dustin H. Ranglack, Neil Reid, David M. Scantlebury, Dawn M. Scott, Nuria Selva, Agnieszka Sergiel, Melissa Songer, Nucharin Songsasen, Jared A. Stabach, Jenna Stacy-Dawes, Morgan B. Swingen, Jeffrey J. Thompson, Wiebke Ullmann, Abi Tamim Vanak, Maria Thaker, John W. Wilson, Koji Yamazaki, Richard W. Yarnell, Filip Zieba, Tomasz Zwijacz-Kozica, William F. Fagan, Thomas Mueller, and Justin M. Calabrese Conservation Biology 34(4):1017-1028

Outmigration survival of wild Chinook salmon smolts through the Sacramento River during historic drought and high water conditions Notch, Jeremy J., Alex S. McHuron, Cyril J. Michel, Flora Cordoleani, Matt Johnson, Mark J. Henderon, and Arnold J. Ammann Environmental Biology of Fishes 103:561-576

Recent declines in salmon body size impact ecosystems and fisheries Oke, K.B., C.J. Cunningham, P.A.H. Westley, M.L. Baskett, S.M. Carlson, J. Clark, A.P. Hendry, V.A. Karatayev, N.W. Kendall, J. Kibele, H.K. Kindsvater, K.M. Kobayashi, B. Lewis, S. Munch, J.D. Reynolds, G.K. Vick, and E.P. Palkovacs Nature Communications 11:4155 (13 p.)

Unique coevolution of genital asymmetry and lateralized mating behavior in a mammal [abstract] Orbach, D.N., P.L.R. Brennan, B.P. Hedrick, W. Keener, M. Webber, and S.L. Mesnick Integrative and Comparative Biology 60(supp.1):E179

Asymmetric and spiraled genitalia coevolve with unique lateralized mating behavior Orbach, Dara N., Patricia L.R. Brennan, Brandon P. Hedrick, William Keener, Marc A. Webber, and Sarah L. Mesnick Scientific Reports 10:3257 (8 p.)