NOAA FISHERIES

Arrowtooth flounder STAR Panel report Ralston, Steve, Patrick Cordue, Devorah Hart, Jim Ianelli, and Paul Medley In: Status of the Pacific coast groundfish fishery through 2008, stock assessment and fishery evaluation: Stock assessments, STAR Panel reports, and rebuilding analyses. Pacific Fishery Management Council, Portland, Oregon. 12 p.

Development and characterization of nine polymorphic microsatellite markers for Mexican spadefoot toads (Spea multiplicata) with cross-amplification in Plains spadefoot toads (S. bobmifrons) Rice, A.M., D.E. Pearse, T. Becker, R.A. Newman, C. Lebonville, G.R. Harper, and K.S. Pfennig Molecular Ecology Resources 8(6):1386-1389

Seasonal patterns of terrestrial and aquatic prey abundance and use by Oncorhynchus mykiss in a California coastal basin with a Mediterranean climate Rundio, David E., and Steven T. Lindley Transactions of the American Fisheries Society 137(2):467-480

Multiple paternity in viviparous kelp rockfish, Sebastes atrovirens Sogard, Susan M., Elizabeth Gilbert-Horvath, Eric C. Anderson, Rebecca Fisher, Steven A. Berkeley, and J. Carlos Garza Environmental Biology of Fishes 81(1):7-13

Maternal effects in rockfishes Sebastes spp.: a comparison among species Sogard, Susan M., Steven A. Berkeley, and Rebecca Fisher Marine Ecology Progress Series 360:227-236

A framework for assessing the viability of threatened and endangered salmon and steelhead in the North-Central California Coast Recovery Domain Spence, Brian C., Eric P. Bjorkstedt, John Carlos Garza, Jerry J. Smith, David G. Hankin, David Fuller, Weldon E. Jones, Rrichard Macedo, Thomas H. Williams, and Ethan Mora U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-423. 173 p.

Monitoring MPAs in deep water off central California: 2007 IMPACT submersible baseline survey Starr, Richard, Mary Yoklavich, et al. California Sea Grant College Program, Publication no. T-067. 21 p.

A statistical modeling method for estimating mortality and abundance of spawning salmon from a time series of counts Szerlong, R.G., and D.E. Rundio Canadian Journal of Fisheries and Aquatic Sciences 65:17-26

Habitat restoration cost references for salmon recovery planning Thomson, Cynthia J., and Corinne Pinkerton U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-425. 75 p.

Allele ladder-based standardization of existing coho salmon microsatellite data and implementation in the GAPS database Van Doornik, Donald, Michael Banks, John Carlos Garza, Libby Gilbert, Todd Kassler, Eric LaHood, Cara Lewis, Paul Moran, Veronique Theriault, Ken Warheit, and John Wenburg Report to the Pacific Salmon Commission Southern Boundary Restoration & Enhancement Fund, Project SF-2008-I-4, 52 p.

Legal viability, societal values, and SPOIR: response to D'Elia et al. Waples, Robin S., Peter B. Adams, James Bohnsack, and Barbara L. Taylor Conservation Biology 22(4):1075-1077

Range expansion of the Humboldt squid was not caused by tuna fishing Watters, George M., Robert J. Olson, John C. Field, and Timothy E. Essington Proceedings of the National Academy of Sciences of the United States of America 105(3):E5 INVERTEBRATES - CEPHALOPODS - SQUID - HUMBOLDT SQUID - PACIFIC - CALIFORNIA - RANGE - EXPANSION - MARINE FISHES - TUNAS - TUNA FISHERIES - FISHING

Untangling the relationships among climate, prey and top predators in an ocean ecosystem Wells, B. K., J. C. Field, J. A. Thayer, C. B. Grimes, S. J. Bograd, W. J. Sydeman, F. B Schwing, and R. Hewitt Marine Ecology Progress Series 364:15-29

Relationships between oceanic conditions and growth of Chinook salmon (Oncorhynchus tshawytscha) from California, Washington, and Alaska, USA Wells, Brian K., Churchill B. Grimes, John G. Sneva, Scott McPherson, and James B. Waldvogel Fisheries Oceanography 17(2):101-125

Incorporation of ocean environmental variation in the Klamath River fall Chinook (KRFC) salmon stock assessment Wells, Brian, Michael Mohr, Masami Fujiwara, and Churchill Grimes Report to NOAA Fisheries and the Environment (FATE) program, Project 07-08. NOAA National Marine Fisheries Service, Silver Spring, Maryland. 3 p.

Geographic variation in genetic and meristic characters of coastal cutthroat trout Williams, Thomas H., and Gordon H. Reeves Connolly, P.J., T.H. Williams, and R.E. Gresswell (eds.), The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation, p. 110-111. American Fisheries Society, Oregon Chapter.

Framework for assessing viability of threatened coho salmon in the Southern Oregon/Northern California Coast Evolutionarily Significant Unit Williams, Thomas H., Brian C. Spence, Walt Duffy, Dave Hillemeier, George Kautsky, Tom E. Lisle, Mike McCain, Thomas E. Nickelson, Ethan Mora, and Tom Pearson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-432. 96 p.

Twenty years of research on demersal communities using the Delta submersible in the northeast Pacific Yoklavich, M.M., and V. O'Connell J. R. Reynolds and H. G. Greene (eds.), Marine habitat mapping technology for Alaska, p. 143-155. Alaska Sea Grant College Program, University of Alaska, Fairbanks.

Population status of North American green sturgeon, Acipenser medirostris. Adams, P. B., C. Grimes, J. E. Hightower, S. T. Lindley, M. L. Moser, and M. J. Parsley. Environmental Biology of Fishes 76(3-4):339-356 MARINE FISHES - STURGEONS - NORTH AMERICAN GREEN STURGEON - POPULATION - STATUS

Coho salmon are native south of San Francisco Bay: a reexamination of North American coho salmon's southern range limit Adams, P., L. Botsford, K. Gobalet, R. Leidy, D. McEwan, P. Moyle, J. Smith, J. Williams, and R. Yoshiyama Fisheries 32(8):441-451

Patterns of historical balancing selection on the salmonid major histocompatibility complex class II ß gene Aguilar, A., and J.C. Garza Journal of Molecular Evolution 65:34-43

MHC evolution in rockfishes Aguilar, A., and J.C. Garza E.A. Berntson, P.S. Levin, and P. Moran (eds.), Conservation of north Pacific rockfishes: ecological genetics and stock structure: proceedings of the workshop (March 2-3, 2004, Seattle, Washington), p. 44-46. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-80.

Mosaics of benthic habitats using laser line scan technology Amend, Mark A., Mary M. Yoklavich, Yuri Rzhanov, Churchill B. Grimes, and W. Waldo Wakefield Brian J. Todd and H. Gary Greene (eds.), Mapping the seafloor for habitat characterization, p. 61-69. Geological Association of Canada Special Paper 47.

Estimation of the number of individuals founding colonized populations Anderson, Eric C., and Montgomery Slatkin Evolution 61(4):972-983

Multiscale habitat associations of deepwater demersal fishes off central California. Anderson, T. J., and M. M. Yoklavich. Fishery Bulletin (U.S.) 105:168-179. MARINE FISHES - DEMERSAL - CALIFORNIA - DEEPWATER - HABITAT

The distribution, abundance, and habitat relationships of deep-water demersal fishes in the Cordell Bank National Marine Sanctuary (CBNMS), USA: the importance of establishing sound baselines for future monitoring [extended abstract] Anderson, T. J., D. A. Roberts, and D. Howard J. C. Day, et al (eds.), IMPAC 1 2005 Conference Proceedings (First International Marine Protected Areas Congress, Victoria, Australia, October 2005), p. 222-223. IMPAC.

A rapid method to characterize seabed habitats and associated macro-organisms Anderson, Tara J., Guy R. Cochrane, Dale A. Roberts, Hank Chezar, and Gerry Hatcher Brian J. Todd and H. Gary Greene (eds.), Mapping the seafloor for habitat characterization, p. 71-79. Geological Association of Canada Special Paper 47.

PSC Genetic Stock Identification Workshop (May and September 2007): Logistics Workgroup final report and recommendations Ardren, Bill, John Candy, Brodie Cox, Doug Dehart, Carlos Garza, Allen Grover, Denise Hawkins, Bill Johnson, Richard Kang, George Nandor, Eric Schindler, Lisa Seeb, Eric Volk, and Bruce White Pacific Salmon Commission, Vancouver, British Columbia, Canada. 55 p.

Cruise report, NOAA Ship David Starr Jordan DS-06-03, May 5 - June 18, 2006: Rockfish recruitment assessment, Fisheries Ecology Division, NOAA NMFS SWFSC Baltz, Ken National Marine Fisheries Service, Santa Cruz, California. 23 p. (Author not specified in document.)

Identifying the contribution of wild and hatchery Chinook salmon (Oncorhynchus tshawytscha) to the ocean fishery using otolith microstructure as natural tags Barnett-Johnson, R., C.B. Grimes, C.F. Royer, and C.J. Donohoe Canadian Journal of Fisheries and Aquatic Sciences 64:1683-1692

Sediment production on forest road surfaces in California's redwood region: results for hydrologic year 2005-2006 Barrett, Brian, and David Tomberlin In: Sustaining America's forests: Proceedings, Society of American Foresters 2007 National Convention (October 23-27, 2007, Portland, Oregon) [CD-ROM]. Society of American Foresters, Bethesda, Maryland.

Bottom-up and top-down indicators of ecosystem variability: an integrated ecosystem assessment for the California Current system Bograd, Steven, Frank Schwing, William Sydeman, Julie Thayer, John Field, Brian Wells, Roger Hewitt, and Kevin Hill Report to NOAA Fisheries and the Environment (FATE) program, Project 06-16. NOAA National Marine Fisheries Service, Silver Spring, Maryland. 2 p.

A new low-cost instream antenna system for tracking passive integrated transponder (PIT)-tagged fish in small streams Bond, Morgan H., Chad V. Hanson, Robert Baertsch, Sean A. Hayes, and R. Bruce MacFarlane Transactions of the American Fisheries Society 136(3):562-566

Stream temperature and the potential growth and survival of juvenile Oncorhynchus mykiss in a southern California creek Boughton, David A., Michael Gibson, Robert Yedor, and Elise Kelley Freshwater Biology 52(7):1353-1364

Viability criteria for steelhead of the south-central and southern California coast Boughton, David A., Peter B. Adams, Eric Anderson, Craig Fusaro, Edward Keller, Elise Kelley, Leo Lentsch, Jennifer Nielsen, Katie Perry, Helen Regan, Jerry Smith, Camm Swift, Lisa Thompson, Fred Watson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-407. 33 p. ANADROMOUS FISHES - STEELHEAD - CALIFORNIA - HABITAT - COASTAL MONITORING - RECOVERY PLANNING - POPULATION - VIABILITY - CRITERIA

A spatially explicit ecosystem model of the California Current's food web and oceanography Brand, E. J., I. C. Kaplan, C. J. Harvey, P. S. Levin, E. A. Fulton, A. J. Hermann, and J. C. Field U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-84. 145 p.

Regional comparisons of juvenile salmon feeding in coastal marine waters off the west coast of North America Brodeur, Richard D., Elizabeth A. Daly, Molly V. Sturdevant, Todd W. Miller, Jamal H. Moss, Mary E. Thiess, March Trudel, Laurie A. Weitkamp, Janet Armstrong, and Elizabeth C. Norton In: Churchill B. Grimes, Richard D. Brodeur, Lewis J. Haldorson, and Stewart M. McKinnell (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons, p. 183-203. American Fisheries Society Symposium 57.

Developing design guidance for offshore MPAs Brown, J.A., and L. Wooninck MPA News 9(2):4

Applying marine habitat data to fishery management on the US west coast: initiating a policy-science feedback loop Copps, Stephen L., Mary M. Yoklavich, Graeme B. Parkes, W. Waldo Wakefield, Allison Bailey, H. Gary Greene, Chris Goldfinger, and Robert W. Burn Brian J. Todd and H. Gary Greene (eds.), Mapping the seafloor for habitat characterization, p. 451-462. Geological Association of Canada Special Paper 47.

Population structure and genetic diversity of trout (Oncorhynchus mykiss) above and below natural and man-made barriers in the Russian River, California Deiner, K., J.C. Garza, R. Coey, and D.J. Girman Conservation Genetics 8(2):437-454

Population dynamics of an unexploited rockfish (Sebastes jordani) in the California Current Field, J.C., E.J. Dick, M. Key, M. Lowry, Y. Lucero, A. MacCall, D. Pearson, S. Ralston, W. Sydeman, and J. Thayer In: Jonathan Heifetz et al. (eds.), Biology, assessment, and management of North Pacific rockfishes (23rd Lowell Wakefield Symposium), p. 451-472. Alaska Sea Grant, AK-SG-07-01. MARINE FISHES - ROCKFISHES - SHORTBELLY ROCKFISH - POPULATION DYNAMICS - CALIFORNIA CURRENT

NMFS Southwest Fisheries Science Center: Agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee Field, John (ed.), Anne Allen, John Hyde, Janet Mason, Deanna Pinkard, Stephen Ralston, Susan Sogard, Cynthia Thomson, and William Watson In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: Forty-eighth annual meeting of the TSC (April 24-25, 2007, Southwest Fisheries Science Center, Santa Cruz, California), p. 183-203. Pacific States Marine Fisheries Commission, Portland, Oregon.

Stock assessment model for the shortbelly rockfish, Sebastes jordani, in the California Current Field, John C., Edward J. Dick, and Alec D. MacCall U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-405. 83+21 p. MARINE FISHES - ROCKFISHES - SHORTBELLY ROCKFISH - STOCKS - STOCK ASSESSEMENT MODEL - MODELS - CALIFORNIA CURRENT

Range expansion and trophic interactions of the jumbo squid, Dosidicus gigas, in the California Current Field, John C., Ken Baltz, A. Jason Phillips, and William A. Walker CalCOFI Reports 48:131-146

Comparisons of the coastal distributions and abundances of juvenile Pacific salmon from central California to the northern Gulf of Alaska Fisher, Joseph, Marc Trudel, Arnold Ammann, Joseph A. Orsi, Jack Piccolo, Cynthia Bucher, Edmundo Casillas, Jeffrey A. Harding, R. Bruce MacFarlane, Richard D. Brodeur, John F. T. Morris, and David W. Welch C. B. Grimes et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. American Fisheries Society Symposium 57:31-80.

Trade-offs between size and energy reserves reflect alternative strategies for optimizing larval survival potential in rockfish Fisher, R., S. Sogard, and S. Berkeley Marine Ecology Progress Series 344:257-270

Ten commandments for ecosystem-based fisheries scientists Francis, Robert C., Mark A. Hixon, M. Elizabeth Clarke, Steven A. Murawski, and Stephen Ralston Fisheries 32(5):217-233

Extinction-effective population index: incorporating life-history variations in population viability analysis Fujiwara, M. Ecology 88(9):2345-2353

Large scale parentage inference as an alternative to coded-wire tags for salmon fishery management Garza, John Carlos, and Eric Anderson In: PSC Genetic Stock Identification Workshop (May and September 2007): Logistics Workgroup final report and recommendations, p. 48-55. Pacific Salmon Commission, Vancouver, British Columbia, Canada.

Multibeam sonar surveys and geological habitat mapping of the seafloor within the Cowcod Conservation Areas (CCA), Southern California continental borderland Goldfinger, Chris, Chris Romsos, Jason Chaytor, Mary Yoklavich, Mark Amend, Diana Watters, Waldo Wakefield, and Lawrence Hufnagle Oregon State University, Active Tectonics and Seafloor Mapping Laboratory, Report ATSML 07-01 (40 p.)

The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons Grimes, Churchill B., Richard D. Brodeur, Lewis J. Haldorson, and Stewart M. McKinnell (eds.) Proceedings of the Symposium "Ocean Ecology of Salmon in Western North America: Regional Comparisons" (Anchorage, AK, 12-13 September 2005). American Fisheries Society Symposium 57. 247 p.

An introduction to the ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons Grimes, Churchill B., Richard D. Brodeur, Stewart M. McKinnell, and Lewis J. Haldorson C. B. Grimes et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. Proceedings of the Symposium "Ocean Ecology of Salmon in Western North America: Regional Comparisons" (Anchorage, AK, 12-13 September 2005). American Fisheries Society Symposium 57:1-6.

Status review of Puget Sound steelhead (Oncorhynchus mykiss) Hard, J.J., J.M. Myers, M.J. Ford, R.G. Kope, G.R. Pess, R.S. Waples, G.A. Winans, B.A. Berejikian, F.W. Waknitz, P.B. Adams, P.A. Bisson, D.E. Campton, and R.R. Reisenbichler U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-81. 117 p.

Archival tagging of salmonids on the central California coast. Hayes, S.A., E.V. Freund, C.V. Hanson, M.H. Bond, and R.B. MacFarlane P. Sheridan, J.W. Ferguson, and S.L. Downing (eds.), Report of the National Marine Fisheries Service workshop on advancing electronic tag technologies and their use in stock assessments (August 23-25, 2005), p. 39-40. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-82.

Data sources: California Habitat Restoration Project cost analysis Hildner, K. Kelly U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-402. 93 p. ECOLOGY - HABITAT - CALIFORNIA HABITAT RESTORATION PROJECT - COST ANALYSIS - DATA SOURCES

Using the California Habitat Restoration Project database to estimate habitat restoration costs for ESA-listed salmonids Hildner, K. Kelly, and Cynthia J. Thomson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-403. 220 p. ECOLOGY - HABITAT - CALIFORNIA HABITAT RESTORATION PROJECT - HABITAT RESTORATION - COSTS - DATABASE - ANADROMOUS FISHES - ESA LISTED SALMONIDS - SALMON

Salmon habitat restoration cost modeling: results and lessons learned Hildner, K. Kelly, and Cynthia J. Thomson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-404. 191 p. ANADROMOUS FISHES - SALMON - HABITATION RESTORATION - COSTS - MODELING - MODELS - RESULTS - LESSONS LEARNED

Simulation of surface erosion on a logging road in the Jackson Demonstration State Forest Ish, T., and D. Tomberlin R.B. Standiford et al. (eds.), Proceedings of the Redwood Region Forest Science Symposium: What does the future hold? U.S. Forest Service, General Technical Report PSW-GTR-194.

Tag return models allowing for harvest and catch and release: evidence of environmental and management impacts on striped bass fishing and natural mortality rates Jiang, Honghua, Kenneth H. Pollock, Cavell Brownie, John M. Hoenig, Robert J. Latour, Brian K. Wells, and Joseph E. Hightower North American Journal of Fisheries Management 27(2):387-396

Klamath River fall Chinook age-specific escapement, river harvest, and run size estimates, 2006 run Klamath River Technical Advisory Team Klamath River Technical Advisory Team. 18 p.

Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2007 season Klamath River Technical Advisory Team Klamath River Technical Advisory Team. 25 p.

Relationship between abundance of juvenile rockfishes (Sebastes spp.) and environmental variables documented off northern California and potential mechanisms for the covariation. Laidig, T. E., J. R. Chess, and D. F. Howard. Fishery Bulletin (U.S.) 105: 39-48 MARINE FISHES - ROCKFISHES - ROCKFISH - JUVENILES - ABUNDANCE - VARIABLES - POTENTIAL MECHANISMS

Identification of historical populations of coho salmon (Oncorhynchus kisutch) in the Oregon Coast Evolutionarily Significant Unit Lawson, P.W., E.P. Bjorkstedt, M.W. Chilcote, C.W. Huntington, J.S. Mills, K.M.S. Moore, T.E. Nickelson, G.H. Reeves, H.A. Stout, T.C. Wainwright, and L.A. Weitkamp U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-79. 126 p.

Framework for assessing viability of threatened and endangered Chinook salmon and steelhead in the Sacramento-San Joaquin Basin. Lindley, S. T., R. S. Schick, E. Mora, P. B. Adams, J. J. Anderson, S. Greene, C. Hanson, B. P. May, D. R. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. San Francisco Estuary and Watershed Science 5(1):4 (26 p.) ANADROMOUS FISHES - SALMON - CHINOOK - STEELHEAD - CALIFORNIA

Acoustic tagging of green sturgeon Lindley, S., and M. Moser P. Sheridan, J.W. Ferguson, and S.L. Downing (eds.), Report of the National Marine Fisheries Service workshop on advancing electronic tag technologies and their use in stock assessments (August 23-25, 2005), p. 7-8. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-82.

Age of black coral (Antipathes dendrochristos) colonies, with notes on associated invertebrate species. Love, M. S., M. M. Yoklavich, B. A. Black, and A. H. Andrews. Bulletin of Marine Science 80(2):391-400 INVERTEBRATES - CORALS - BLACK CORAL - AGE - COLONIES

Population consequences of age-dependent maternal effects in rockfish (Sebastes spp.) Lucero, Yasmin Ph.D. dissertation, University of California, Santa Cruz. 153 p.

Depletion-adjusted average catch MacCall, Alec D. A. Rosenberg, et al. (eds.), Setting annual catch limits for U.S. fisheries: An expert working group report, p. 27-31. Lenfest Ocean Program, Washington, D.C.

Ecosystem-based fisheries management: some practical suggestions Marasco, R.J., D. Goodman, C.B. Grimes, P.W. Lawson, A.E. Punt, and T.J. Quinn II Canadian Journal of Fisheries and Aquatic Sciences 64:928-939

Diets of top predators indicate pelagic juvenile rockfish (Sebastes spp.) abundance in the California Current System. Mills, K. L., T. Laidig, S. Ralston, and W. J. Sydeman. Fisheries Oceanography 16(3):273-283 MARINE FISHES - ROCKFISHES - ROCKFISH - JUVENILES - CALIFORNIA CURRENT ECOSYSTEM - CCE - PREDATORS - DIET

Use of Washington estuaries by subadult and adult green sturgeon. Moser, M., and S. Lindley. Environmental Biology of Fishes 79(3-4):243-253 MARINE FISHES - STURGEONS - GREEN STURGEON - SUBADULT - ADULT - ESTUARIES - HABITAT - WASHINGTON

Summary of bronzespotted rockfish (Sebastes gilli) conservation concerns NOAA Southwest Fisheries Science Center March 2007 briefing book, Agenda item E.2.b, Attachment 3 (3 p.). Pacific Fishery Management Council, Portland, Oregon.

Epipelagic fish assemblages associated with juvenile Pacific salmon in neritic waters of the California Current and the Alaska Current Orsi, Joseph A., Jeffrey A. Harding, Suzan S. Pool, Richard D. Brodeur, Lewis J. Haldorson, James M. Murphy, Jamal H. Moss, Edward V. Farley, Jr., Ruston M. Sweeting, John F.T. Morris, Marc Trudel, Richard J. Beamish, Robert L. Emmett, and Emily A. Fergusson C.B. Grimes, et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons, p. 105-155. American Fisheries Society Symposium 57.

The effect of vaterite deposition on sound reception, otolith morphology, and inner ear sensory epithelia in hatchery-reared Chinook salmon (Oncorhynchus tshawytscha) Oxman, D.S., R. Barnett-Johnson, M.E. Smith, A. Coffin, D.L. Miller, R. Josephson, and A.N. Popper Canadian Journal of Fisheries and Aquatic Sciences 64:1469-1478

Klamath River fall Chinook overfishing assessment Pacific Fishery Management Council (Klamath River Fall Chinook Review Workgroup) Pacific Fishery Management Council, Portland, Oregon. 41 p.

Preseason report I: Stock abundance analysis for 2007 ocean salmon fisheries Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 90 p.

Preseason report II: Analysis of proposed regulatory options for 2007 ocean salmon fisheries Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 45 p.

Preseason report III: Analysis of Council adopted management measures for 2007 ocean salmon fisheries Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 36 p.

Review of 2006 ocean salmon fisheries Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 312 p.

Genetic diversity and differentiation between the two remaining populations of the critically endangered Mediterranean monk seal Pastor, T., J. C. Garza, A. Aguilar, E. Tounta, and E. Androukaki Animal Conservation 10(4):461-469

Population genetics of steelhead (Oncorhynchus mykiss) in the Klamath River Pearse, D.E., C.J. Donohoe, and J.C. Garza Environmental Biology of Fishes 80:377-387

Identification of northeastern Pacific rockfish using multilocus nuclear DNA genotypes Pearse, D.E., L. Wooninck, C.A. Dean, and C.J. Garza Transactions of the American Fisheries Society 136(1):272-280

Recent pre-recruit Pacific hake (Merluccius productus) occurrences in the northern California Current suggest a northward expansion of their spawning area Phillips, A. Jason, Stephen Ralston, Richard D. Brodeur, Toby D. Auth, Robert L. Emmett, Carrie Johnson, and Vidar G. Wespestad CalCOFI Reports 48:215-229

A management strategy evaluation of rebuilding revision rules for overfished rockfish stocks Punt, André E., and Stephen Ralston J. Heifetz, et al. (eds.), Biology, assessment, and management of north Pacific rockfishes, p. 329-351. Alaska Sea Grant no. AK-SG-07-01.

Influence of headwater site conditions and riparian buffers on terrestrial salamander response to forest thinning Rundio, David E., and Deanna H. Olson Forest Science 53(2):320-330

High-frequency patterns in abundance of larval Pacific hake, Merluccius productus, and rockfish, Sebastes spp., at a single fixed station off central California. Sakuma, K. M., S. Ralston, and D. A. Roberts. Fisheries Oceanography 16(4):383-394. MARINE FISHES - ROCKFISHES - ROCKFISH - PACIFIC HAKE - CALIFORNIA - LARVAE - ABUNDANCE - MONITORING - TRENDS - LESSONS - STATION DATA

Directed connectivity among fish populations in a riverine network Schick, Robert S., and Steven T. Lindley Journal of Applied Ecology 44(6):1116-1126

Development of a standardized DNA database for Chinook salmon Seeb, L.W., A. Antonovich, M.A. Banks, T.D. Beacham, M.R. Bellinger, S.M. Blankenship, M.R. Campbell, N.A. Decovich, J.C. Garza, C.M. Guthrie III, T.A. Lundrigan, P. Moran, S.R. Narum, J.J. Stephenson, K.J. Supernault, D.J. Teel, W.D. Templin, et al. Fisheries 32:540-552

The ecology of marine fishes, California and adjacent waters [book review] Sogard, Susan M. Fisheries 32(3):145-146

Evidence for the existence of a native population of sockeye salmon (Oncorhynchus nerka) and subsequent introgression with introduced populations in a Pacific Northwest watershed Spies, I.B., E.C. Anderson, K. Naish, and P. Bentzen Canadian Journal of Fisheries and Aquatic Sciences 64:1209-1221

Logbook pilot program for California’s nearshore groundfish fishery: results and lessons learned Thomson, Cynthia, David VenTresca, and David Colpo U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-408. 29+2 p. MARINE FISHES - GROUNDFISHES - CALIFORNIA - NEARSHORE GROUNDFISH FISHERY - LOGBOOK PILOT PROGRAM - RESULTS - LESSONS LEARNED

When is logging road erosion worth monitoring? Tomberlin, D., and T. Ish Proceedings of the International Mountain Logging and 13th Pacific Northwest Skyline Symposium (April 1-6, 2007, Corvallis, Oregon), p. 239-244. Oregon State University, College of Forestry, Corvallis, Oregon. (CD-ROM)

Trip-level analysis of efficiency changes in Oregon's deepwater trawl fishery Tomberlin, David, and Garth Holloway Fondazione Eni Enrico Mattei, Nota di Lavoro (Working Paper) 86.2007. (17 p.)

Regional variation in the marine growth and energy accumulation of juvenile Chinook salmon and coho salmon along the west coast of North America Trudel, Marc, Mary E. Thiess, Cynthia Bucher, Edward V. Farley Jr., R. Bruce MacFarlane, Edmundo Casillas, Joseph Fisher, John F. T. Morris, James M. Murphy, and David W. Welch C. B. Grimes et al. (eds.), The ecology of juvenile salmon in the northeast Pacific Ocean: regional comparisons. American Fisheries Society Symposium 57:205-232.

A biological framework for evaluating whether a species is threatened or endangered in a significant portion of its range Waples, R.S., P.B. Adams, J. Bohnsack, and B.L. Taylor Conservation Biology 21(4):964-974

Normativity redux Waples, Robin S., Peter B. Adams, James Bohnsack, and Barbara L. Taylor Conservation Biology 21(6):1649-1650

Quantifying the effects of wind, upwelling, curl, sea surface temperature and sea level height on growth and maturation of a California Chinook salmon (Oncorhynchus tshawytscha) population. Wells, B. K., C. B. Grimes, and J. B. Waldvogel. Fisheries Oceanography 16(4):363-382 ANADROMOUS FISHES - SALMON - CHINOOK - GROWTH - MATURATION - CLIMATE - WIND - UPWELLING - CURL - SEA SURFACE TEMPERATURE - SEA LEVEL HEIGHT - EFFECTS

MONITORING AND RESEARCH NEEDED TO MANAGE THE RECOVERY OF THREATENED AND ENDANGERED CHINOOK AND STEELHEAD IN THE SACRAMENTO-SAN JOAQUIN BASIN WILLIAMS, J.G., J.J. ANDERSON, S. GREENE, C. HANSON, STEVEN T. LINDLEY, A. LOW, B.P. MAY, D. McEWAN, M.S. MOHR, R.B. MacFARLANE, AND C. SWANSON U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-399. 11 p. ANADROMOUS FISHES - SALMON - CHINOOK - STEELHEAD - CALIFORNIA - SACRAMENTO SAN JOAQUIN BASIN - THREATENED - ENDANGERED - RECOVERY - MONITORING

A fishery-independent assessment of an overfished rockfish stock, cowcod (Sebastes levis), using direct observations from an occupied submersible Yoklavich, M.M., M.S. Love, and K.A. Forney Canadian Journal of Fisheries and Aquatic Sciences 64:1795-1804

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