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SWFSC Publications Search

The SWFSC publications website serves as an archival repository of documents published and/or authored by SWFSC staff and funded partners. As a repository, the SWFSC publications website retains documents in their original published format to ensure public access to scientific information.

       

8,906 Search Result(s)



Estimating bycatch mortality for marine mammals: concepts and best practices

Moore, Jeffrey E., Dennis Heinemann, Tessa B. Francis, Philip S. Hammond, Kristy J. Long, Andre E. Punt, Randall R. Reeves, Maritza Sepulveda, Gudjon Mar Sigurdsson, Margaret C. Siple, Gisli A. Vikingsson, Paul R. Wade, Rob Williams, and Alexandre N. Zerbini
2022
Frontiers in Marine Science 8:752356
https://doi.org/10.3389/fmars.2021.752356
Estimating bycatch mortality for marine mammals: concepts and best practices Moore, Jeffrey E., Dennis Heinemann, Tessa B. Francis, Philip S. Hammond, Kristy J. Long, Andre E. Punt, Randall R. Reeves, Maritza Sepulveda, Gudjon Mar Sigurdsson, Margaret C. Siple, Gisli A. Vikingsson, Paul R. Wade, Rob Williams, and Alexandre N. Zerbini Frontiers in Marine Science 8:752356
2022Moore
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Surveys of the Angolan coast uncover the largest olive ridley sea turtle nesting population in the Atlantic and the largest non-arribada population globally

Morais, Miguel, and Manjula Tiwari
2022
Oryx 56(5):789-797
https://doi.org/10.1017/S003060532100065X
Surveys of the Angolan coast uncover the largest olive ridley sea turtle nesting population in the Atlantic and the largest non-arribada population globally Morais, Miguel, and Manjula Tiwari Oryx 56(5):789-797
2022Morais
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Temperature independence of haemoglobin-oxygen affinity in smalleye Pacific opah (Lampris incognitus) and swordfish (Xiphias gladius)

Morrison, Phillip R., Diego Bernal, Chugey A. Sepulveda, Nicholas C. Wegner, and Colin J. Brauner
2022
Journal of Experimental Biology 225(19):jeb243820 (15 p.)
https://doi.org/10.1242/jeb.243820
Temperature independence of haemoglobin-oxygen affinity in smalleye Pacific opah (Lampris incognitus) and swordfish (Xiphias gladius) Morrison, Phillip R., Diego Bernal, Chugey A. Sepulveda, Nicholas C. Wegner, and Colin J. Brauner Journal of Experimental Biology 225(19):jeb243820 (15 p.)
2022Morrison
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Shark centra microanatomy and mineral density variation studied with laboratory microComputed Tomography

Morse, Paul E., Michala K. Stock, Kelsey C. James, Lisa J. Natanson, and Stuart R. Stock
2022
Journal of Structural Biology 214(1):107831 (11 p.)
https://doi.org/10.1016/j.jsb.2022.107831
Shark centra microanatomy and mineral density variation studied with laboratory microComputed Tomography Morse, Paul E., Michala K. Stock, Kelsey C. James, Lisa J. Natanson, and Stuart R. Stock Journal of Structural Biology 214(1):107831 (11 p.)
2022Morse
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Risk and reward in foraging migrations of North Pacific Albacore determined from estimates of energy intake and movement costs

Muhling, Barbara A., Stephanie Snyder, Elliott L. Hazen, Rebecca E. Whitlock, Heidi Dewar, Jong-Yeon Park, Charles A. Stock, and Barbara A. Block
2022
Frontiers in Marine Science 9:730428 (17 p.)
https://doi.org/10.3389/fmars.2022.730428
Risk and reward in foraging migrations of North Pacific Albacore determined from estimates of energy intake and movement costs Muhling, Barbara A., Stephanie Snyder, Elliott L. Hazen, Rebecca E. Whitlock, Heidi Dewar, Jong-Yeon Park, Charles A. Stock, and Barbara A. Block Frontiers in Marine Science 9:730428 (17 p.)
2022Muhling
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Rethinking the prevalence and relevance of chaos in ecology

Munch, Stephan B., Tanya L. Rogers, Bethany J. Johnson, Uttam Bhat, and Cheng-Han Tsai
2022
Annual Review of Ecology, Evolution, and Systematics 53:227-249
https://doi.org/10.1146/annurev-ecolsys-111320-052920
Rethinking the prevalence and relevance of chaos in ecology Munch, Stephan B., Tanya L. Rogers, Bethany J. Johnson, Uttam Bhat, and Cheng-Han Tsai Annual Review of Ecology, Evolution, and Systematics 53:227-249
2022Munch
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One hundred-seventy years of stressors erode salmon fishery climate resilience in California's warming landscape

Munsch, Stuart H., Correigh M. Greene, Nathan J. Mantua, and William H. Satterthwaite
2022
Global Change Biology 28(7):2183-2201
https://doi.org/10.1111/gcb.16029
One hundred-seventy years of stressors erode salmon fishery climate resilience in California's warming landscape Munsch, Stuart H., Correigh M. Greene, Nathan J. Mantua, and William H. Satterthwaite Global Change Biology 28(7):2183-2201
2022Munsch
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Considerations for the development of a juvenile production estimate for Central Valley spring-run Chinook Salmon

Nelson, Peter A., Melinda Baerwald, Oliver (Towns) Burgess, Eva Bush, Alison Collins, Flora Cordoleani, Henry DeBey, Daphne Gille, Pascale A.L. Goertler, Brett Harvey, Rachel C. Johnson, Jason Kindopp, Erica Meyers, Jeremy Notch, Corey C. Phillis, Gabriel Singer, and Ted Sommer
2022
San Francisco Estuary and Watershed Science 20(2):art2 (23 p.)
https://doi.org/10.15447/sfews.2022v20iss2art2
Considerations for the development of a juvenile production estimate for Central Valley spring-run Chinook Salmon Nelson, Peter A., Melinda Baerwald, Oliver (Towns) Burgess, Eva Bush, Alison Collins, Flora Cordoleani, Henry DeBey, Daphne Gille, Pascale A.L. Goertler, Brett Harvey, Rachel C. Johnson, Jason Kindopp, Erica Meyers, Jeremy Notch, Corey C. Phillis, Gabriel Singer, and Ted Sommer San Francisco Estuary and Watershed Science 20(2):art2 (23 p.)
2022Nelson
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Riverine fish density, predator-prey interactions, and their relationships with artificial light at night

Nelson, T. Reid, Cyril J. Michel, Meagan P. Gary, Brendan M. Lehman, Nicholas J. Demetras, Peter N. Dudley, Jeremy J. Hammen, and Michael J. Horn
2022
Ecosphere 13(10):e4261 (16 p.)
https://doi.org/10.1002/ecs2.4261
Riverine fish density, predator-prey interactions, and their relationships with artificial light at night Nelson, T. Reid, Cyril J. Michel, Meagan P. Gary, Brendan M. Lehman, Nicholas J. Demetras, Peter N. Dudley, Jeremy J. Hammen, and Michael J. Horn Ecosphere 13(10):e4261 (16 p.)
2022Nelson2
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Where are the beachmasters? Unexpectedly weak polygyny among southern elephant seals on a South Shetland Island

Nichols, H.J., B. Fuchs, A.J. Paijmans, G. Lewis, C.A. Bonin, M.E. Goebel, and J.I. Hoffman
2022
Journal of Zoology 316(2):104-117
https://doi.org/10.1111/jzo.12936
Where are the beachmasters? Unexpectedly weak polygyny among southern elephant seals on a South Shetland Island Nichols, H.J., B. Fuchs, A.J. Paijmans, G. Lewis, C.A. Bonin, M.E. Goebel, and J.I. Hoffman Journal of Zoology 316(2):104-117
2022Nichols
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Poor downstream passage at a dam creates an ecological trap for migratory fish

Ohms, Haley A., Dereka N. Chargualaf, Gabriel Brooks, Cory Hamilton, Eric P. Palkovacs, and David A. Boughton
2022
Canadian Journal of Fisheries and Aquatic Sciences 79(12):2204-2215
https://doi.org/10.1139/cjfas-2022-0095
Poor downstream passage at a dam creates an ecological trap for migratory fish Ohms, Haley A., Dereka N. Chargualaf, Gabriel Brooks, Cory Hamilton, Eric P. Palkovacs, and David A. Boughton Canadian Journal of Fisheries and Aquatic Sciences 79(12):2204-2215
2022Ohms
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Speciation genomics and the role of depth in the divergence of rockfishes (Sebastes) revealed through Pool-seq analysis of enriched sequences

Olivares-Zambrano, Daniel, Jacob Daane, John Hyde, Michael W. Sandel, and Andres Aguilar
2022
Ecology and Evolution 12(9):e9341 (13 p.)
https://doi.org/10.1002/ece3.9341
Speciation genomics and the role of depth in the divergence of rockfishes (Sebastes) revealed through Pool-seq analysis of enriched sequences Olivares-Zambrano, Daniel, Jacob Daane, John Hyde, Michael W. Sandel, and Andres Aguilar Ecology and Evolution 12(9):e9341 (13 p.)
2022OlivaresZambrano
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Biogeography in the deep: Hierarchical population genomic structure of two beaked whale species

Onoufriou, Aubrie B., Oscar E. Gaggiotti, Natacha Aguilar de Soto, Morgan L. McCarthy, Phillip A. Morin, Massimiliano Rosso, Merel Dalebout, Nicholas Davison, Robin W. Baird, C. Scott Baker, Simon Berrow, Andrew Brownlow, Daniel Burns, Florence Caurant, Diane Claridge, Rochelle Constantine, Fabien Demaret, Sascha Dreyer, Martina Duras, John W. Durban, Alexandros Frantzis, Luis Freitas, Gabrielle Genty, Ana Galov, Sabine S. Hansen, Andrew C. Kitchener, Vidal Martin, Antonio A. Mignucci-Giannoni, Valeria Montano, Aurelie Moulins, Carlos Olavarria, M. Michael Poole, Cristel Reyes Suarez, Emer Rogan, Conor Ryan, Agustina Schiavi, Paola Tepsich, Jorge Urban R., Kristi West, Morten Tange Olsen, and Emma L. Carroll
2022
Global Ecology and Conservation 40:e02308 (18 p.)
https://doi.org/10.1016/j.gecco.2022.e02308
Biogeography in the deep: Hierarchical population genomic structure of two beaked whale species Onoufriou, Aubrie B., Oscar E. Gaggiotti, Natacha Aguilar de Soto, Morgan L. McCarthy, Phillip A. Morin, Massimiliano Rosso, Merel Dalebout, Nicholas Davison, Robin W. Baird, C. Scott Baker, Simon Berrow, Andrew Brownlow, Daniel Burns, Florence Caurant, Diane Claridge, Rochelle Constantine, Fabien Demaret, Sascha Dreyer, Martina Duras, John W. Durban, Alexandros Frantzis, Luis Freitas, Gabrielle Genty, Ana Galov, Sabine S. Hansen, Andrew C. Kitchener, Vidal Martin, Antonio A. Mignucci-Giannoni, Valeria Montano, Aurelie Moulins, Carlos Olavarria, M. Michael Poole, Cristel Reyes Suarez, Emer Rogan, Conor Ryan, Agustina Schiavi, Paola Tepsich, Jorge Urban R., Kristi West, Morten Tange Olsen, and Emma L. Carroll Global Ecology and Conservation 40:e02308 (18 p.)
2022Onoufriou
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The foraging behavior of nonbreeding Adelie penguins in the western Antarctic Peninsula during the breeding season

Oosthuizen, W. Chris, Pierre A. Pistorius, Malgorzata Korczak-Abshire, Jefferson T. Hinke, Mercedes Santos, and Andrew D. Lowther
2022
Ecosphere 13(5):e4090 (16 p.)
https://doi.org/10.1002/ecs2.4090
The foraging behavior of nonbreeding Adelie penguins in the western Antarctic Peninsula during the breeding season Oosthuizen, W. Chris, Pierre A. Pistorius, Malgorzata Korczak-Abshire, Jefferson T. Hinke, Mercedes Santos, and Andrew D. Lowther Ecosphere 13(5):e4090 (16 p.)
2022Oosthuizen
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A photogrammetric method to estimate total length of the largest mammal, the blue whale (Balaenoptera musculus)

Ortega-Ortiz, Christian D., Ricardo M. Mata Cruz, Tim Gerrodette, and Diane Gendron
2022
Mammalian Biology 102(3):629-643
https://doi.org/10.1007/s42991-022-00307-6
A photogrammetric method to estimate total length of the largest mammal, the blue whale (Balaenoptera musculus) Ortega-Ortiz, Christian D., Ricardo M. Mata Cruz, Tim Gerrodette, and Diane Gendron Mammalian Biology 102(3):629-643
2022OrtegaOrtiz
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Improving forecasts of sockeye salmon (Oncorhynchus nerka) with parametric and nonparametric models

Ovando, Daniel, Curry Cunningham, Peter Kuriyama, Christopher Boatright, and Ray Hilborn
2022
Canadian Journal of Fisheries and Aquatic Sciences 79(8):1198-1210
https://doi.org/10.1139/cjfas-2021-0287
Improving forecasts of sockeye salmon (Oncorhynchus nerka) with parametric and nonparametric models Ovando, Daniel, Curry Cunningham, Peter Kuriyama, Christopher Boatright, and Ray Hilborn Canadian Journal of Fisheries and Aquatic Sciences 79(8):1198-1210
2022Ovando
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Review of 2021 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan

Pacific Fishery Management Council (Salmon Technical Team)
2022
Pacific Fishery Management Council, Portland, Oregon. 356 p.
Review of 2021 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 356 p.
2022Pacific1
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Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2022 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2022
Pacific Fishery Management Council, Portland, Oregon. 134 p.
Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2022 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 134 p.
2022Pacific2
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Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2022 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2022
Pacific Fishery Management Council, Portland, Oregon. 76 p.
Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2022 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 76 p.
2022Pacific3
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Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2022 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2022
Pacific Fishery Management Council, Portland, Oregon. 60 p.
Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2022 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 60 p.
2022Pacific4
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Reference genomes for conservation

Paez, Sadye, Robert H.S. Kraus, Beth Shapiro, M. Thomas P. Gilbert, Erich D. Jarvis, and the Vertebrate Genomes Project Conservation Group
2022
Science 377(6604):364-366
https://doi.org/10.1126/science.abm8127
Reference genomes for conservation Paez, Sadye, Robert H.S. Kraus, Beth Shapiro, M. Thomas P. Gilbert, Erich D. Jarvis, and the Vertebrate Genomes Project Conservation Group Science 377(6604):364-366
2022Paez
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Demography of an ice-obligate mysticete in a region of rapic environmental change

Pallin, L., K.C. Bierlich, J. Durban, H. Fearnbach, O. Savenko, C.S. Baker, E. Bell, M.C. Double, W. de la Mare, J. Goldbogen, D. Johnston, N. Kellar, R. Nichols, D. Nowacek, A.J. Read, D. Steel, and A. Friedlaender
2022
Royal Society Open Science 9(11):220724 (16 p.)
https://doi.org/10.1098/rsos.220724
Demography of an ice-obligate mysticete in a region of rapic environmental change Pallin, L., K.C. Bierlich, J. Durban, H. Fearnbach, O. Savenko, C.S. Baker, E. Bell, M.C. Double, W. de la Mare, J. Goldbogen, D. Johnston, N. Kellar, R. Nichols, D. Nowacek, A.J. Read, D. Steel, and A. Friedlaender Royal Society Open Science 9(11):220724 (16 p.)
2022Pallin
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Variation in blubber cortisol levels in a recovering humpback whale population inhabiting a rapidly changing environment

Pallin, L.J., N. Botero-Acosta, D. Steel, C.S. Baker, C. Casey, D.P. Costa, J.A. Goldbogen, D.W. Johnston, N.M. Kellar, M. Modest, R. Nichols, D. Roberts, M. Roberts, O. Savenko, and A.S. Friedlaender
2022
Scientific Reports 12:20250 (13 p.)
https://doi.org/10.1038/s41598-022-24704-6
Variation in blubber cortisol levels in a recovering humpback whale population inhabiting a rapidly changing environment Pallin, L.J., N. Botero-Acosta, D. Steel, C.S. Baker, C. Casey, D.P. Costa, J.A. Goldbogen, D.W. Johnston, N.M. Kellar, M. Modest, R. Nichols, D. Roberts, M. Roberts, O. Savenko, and A.S. Friedlaender Scientific Reports 12:20250 (13 p.)
2022Pallin2
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Three-dimensional mapping of mineral in intact shark centra with energy dispersive x-ray diffraction

Park, J.S., H. Chen, K.C. James, L.J. Natanson, and S.R. Stock
2022
Journal of the Mechanical Behavior of Biomedical Materials 136:105506 (11 p.)
https://doi.org/10.1016/j.jmbbm.2022.105506
Three-dimensional mapping of mineral in intact shark centra with energy dispersive x-ray diffraction Park, J.S., H. Chen, K.C. James, L.J. Natanson, and S.R. Stock Journal of the Mechanical Behavior of Biomedical Materials 136:105506 (11 p.)
2022Park2
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Bioapatite in shark centra studied by wide-angle and by small-angle X-ray scattering

Park, J.S., J.D. Almer, K.C. James, L.J. Natanson, and S.R. Stock
2022
Journal of the Royal Society Interface 19(194):20220373 (11 p.)
https://doi.org/10.1098/rsif.2022.0373
Bioapatite in shark centra studied by wide-angle and by small-angle X-ray scattering Park, J.S., J.D. Almer, K.C. James, L.J. Natanson, and S.R. Stock Journal of the Royal Society Interface 19(194):20220373 (11 p.)
2022Park
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Phylogenomic species delimitation dramatically reduces species diversity in an Antarctic adaptive radiation

Parker, Elyse, Alex Dornburg, Carl D. Struthers, Christopher D. Jones, and Thomas J. Near
2022
Systematic Biology 71(1):58-77
https://doi.org/10.1093/sysbio/syab057
Phylogenomic species delimitation dramatically reduces species diversity in an Antarctic adaptive radiation Parker, Elyse, Alex Dornburg, Carl D. Struthers, Christopher D. Jones, and Thomas J. Near Systematic Biology 71(1):58-77
2022Parker
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Periodic environmental disturbance drives repeated ecomorphological diversification in an adaptive radiation of Antarctic fishes

Parker, Elyse, Katerina L. Zapfe, Jagriti Yadav, Bruno Frederich, Christopher D. Jones, Evan P. Economo, Sara Federman, Thomas J. Near, and Alex Dornburg
2022
American Naturalist 200(6):E221-E236
https://doi.org/10.1086/721373
Periodic environmental disturbance drives repeated ecomorphological diversification in an adaptive radiation of Antarctic fishes Parker, Elyse, Katerina L. Zapfe, Jagriti Yadav, Bruno Frederich, Christopher D. Jones, Evan P. Economo, Sara Federman, Thomas J. Near, and Alex Dornburg American Naturalist 200(6):E221-E236
2022Parker2
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Globally important refuge for the loggerhead sea turtle: Maio Island, Cabo Verde

Patino-Martinez Juan, Leno Dos Passos, Ines O. Afonso, Arnau Teixidor, Manjula Tiwari, Tamas Szekeley, and Rocio Moreno
2022
Oryx 56(1):54-62
https://doi.org/10.1017/S0030605320001180
Globally important refuge for the loggerhead sea turtle: Maio Island, Cabo Verde Patino-Martinez Juan, Leno Dos Passos, Ines O. Afonso, Arnau Teixidor, Manjula Tiwari, Tamas Szekeley, and Rocio Moreno Oryx 56(1):54-62
2022PatinoMartinez
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From individual responses to population effects: Integrating a decade of multidisciplinary research on blue whales and sonar

Pirotta, E., C.G. Booth, J. Calambokidis, D.P. Costa, J.A. Fahlbusch, A.S. Friedlaender, J.A. Goldbogen, J. Harwood, E.L. Hazen, L. New, J.A. Santora, S.L. Watwood, C. Wertman, and B.L. Southall
2022
Animal Conservation 25(6):196-810
https://doi.org/10.1111/acv.12785
From individual responses to population effects: Integrating a decade of multidisciplinary research on blue whales and sonar Pirotta, E., C.G. Booth, J. Calambokidis, D.P. Costa, J.A. Fahlbusch, A.S. Friedlaender, J.A. Goldbogen, J. Harwood, E.L. Hazen, L. New, J.A. Santora, S.L. Watwood, C. Wertman, and B.L. Southall Animal Conservation 25(6):196-810
2022Pirotta
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Trade-offs between bycatch and target catches in static versus dynamic fishery closures

Pons, Maite, Jordan T. Watson, Daniel Ovando, Sandra Andraka, Stephanie Brodie, Andres Domingo, Mark Fitchett, Rodrigo Forselledo, Martin Hall, Elliott L. Hazen, Jason E. Jannot, Miguel Herrera, Sebastian Jimenez, David M. Kaplan, Sven Kerwath, Jon Lopez, Jon McVeigh, Lucas Pacheco, Liliana Rendon, Kate Richerson, Rodrigo Sant'Ana, Rishi Sharma, James A. Smith, Kayleigh Somers, and Ray Hilborn
2022
Proceedings of the National Academy of Sciences of the United States of America 119(4):e2114508119 (11 p.)
https://doi.org/10.1073/pnas.2114508119
Trade-offs between bycatch and target catches in static versus dynamic fishery closures Pons, Maite, Jordan T. Watson, Daniel Ovando, Sandra Andraka, Stephanie Brodie, Andres Domingo, Mark Fitchett, Rodrigo Forselledo, Martin Hall, Elliott L. Hazen, Jason E. Jannot, Miguel Herrera, Sebastian Jimenez, David M. Kaplan, Sven Kerwath, Jon Lopez, Jon McVeigh, Lucas Pacheco, Liliana Rendon, Kate Richerson, Rodrigo Sant'Ana, Rishi Sharma, James A. Smith, Kayleigh Somers, and Ray Hilborn Proceedings of the National Academy of Sciences of the United States of America 119(4):e2114508119 (11 p.)
2022Pons
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Decline and recovery of pelagic acoustic backscatter following El Nino events in the Gulf of California, Mexico

Portner, Elan J., Kelly J. Benoit-Bird, Elliott L. Hazen, Chad M. Waluk, Carlos J. Robinson, Jaime Gomez-Gutierrez, and William F. Gilly
2022
Progress in Oceanography 206:102823 (11 p.)
https://doi.org/10.1016/j.pocean.2022.102823
Decline and recovery of pelagic acoustic backscatter following El Nino events in the Gulf of California, Mexico Portner, Elan J., Kelly J. Benoit-Bird, Elliott L. Hazen, Chad M. Waluk, Carlos J. Robinson, Jaime Gomez-Gutierrez, and William F. Gilly Progress in Oceanography 206:102823 (11 p.)
2022Portner2
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Pacific bluefin tuna, Thunnus orientalis, exhibits a flexible feeding ecology in the Southern California Bight

Portner, Elan J., Owyn Snodgrass, and Heidi Dewar
2022
PLoS ONE 17(8):e0272048 (20 p.)
https://doi.org/10.1371/journal.pone.0272048
Pacific bluefin tuna, Thunnus orientalis, exhibits a flexible feeding ecology in the Southern California Bight Portner, Elan J., Owyn Snodgrass, and Heidi Dewar PLoS ONE 17(8):e0272048 (20 p.)
2022Portner
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ClimateWEST: A climate science activity

Pozo Buil, Mercedes, Hope Ianiri, Gemma Carroll, and Robin Trayler
2022
In: Scott Seagroves et al. (eds.), Leaders in effective and inclusive STEM: Twenty years of the Institute for Scientist and Engineer Educators, p. 291-304. University of California Santa Cruz, Institute for Scientist and Engineer Educators. https://escholarship.org/uc/item/7ch3f7zz
ClimateWEST: A climate science activity Pozo Buil, Mercedes, Hope Ianiri, Gemma Carroll, and Robin Trayler In: Scott Seagroves et al. (eds.), Leaders in effective and inclusive STEM: Twenty years of the Institute for Scientist and Engineer Educators, p. 291-304. University of California Santa Cruz, Institute for Scientist and Engineer Educators. https://escholarship.org/uc/item/7ch3f7zz
2022PozoBuil
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Kinship genomics approach to study mating systems in a depleted sea turtle rookery

Prakash, Shritika S., Monal M. Lal, Peter H. Dutton, Ciro Rico, and Susanna Piovano
2022
Regional Studies in Marine Science 51:102174 (9 p.)
https://doi.org/10.1016/j.rsma.2022.102174
Kinship genomics approach to study mating systems in a depleted sea turtle rookery Prakash, Shritika S., Monal M. Lal, Peter H. Dutton, Ciro Rico, and Susanna Piovano Regional Studies in Marine Science 51:102174 (9 p.)
2022Prakash
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Editorial: Assessment approaches to support bycatch management for marine mammals

Punt, Andre E., Tessa B. Francis, Jeffrey E. Moore, and Randall R. Reeves
2022
Frontiers in Marine Science 9:928127 (3 p.)
https://doi.org/10.3389/fmars.2022.928127
Editorial: Assessment approaches to support bycatch management for marine mammals Punt, Andre E., Tessa B. Francis, Jeffrey E. Moore, and Randall R. Reeves Frontiers in Marine Science 9:928127 (3 p.)
2022Punt
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Applications of GIS and remote sensing in public participation and stakeholder engagement for watershed management

Quinn, Nigel W.T., Vamsi Sridharan, John Ramirez-Avila, Sanaz Imen, Huilin Gao, Rocky Talchabhadel, Saurav Kumar, and Walter McDonald
2022
Socio-Environmental Systems Modelling 4(4):18149 (27 p.)
https://doi.org/10.18174/sesmo.18149
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Foraging ecology of green turtles (Chelonia mydas) in Peru: relationships with ontogeny and environmental variability

Quinones, Javier, Evelyn Paredes-Coral, and Jeffrey A. Seminoff
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Marine Biology 169:139 (16 p.)
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Hedonic price functions and market structure: An analysis of supply-motivated submarkets for salmon in California

Ray, Kevin D., Daniel K. Lew, and Rosemary Kosaka
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Marine Resource Economics 37(2):135-154
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Report on the Summer 2021 California Current Ecosystem Survey (CCES) (2107RL), 6 July to 15 October 2021, conducted aboard NOAA ship Reuben Lasker, Mexican research vessel Dr. Jorge Carranza Fraser, fishing vessels Lisa Marie and Long Beach Carnage, and uncrewed surface vehicles

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U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-669. 47 p.
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Report on the Summer 2021 California Current Ecosystem Survey (CCES) (2107RL), 6 July to 15 October 2021, conducted aboard NOAA ship Reuben Lasker, Mexican research vessel Dr. Jorge Carranza Fraser, fishing vessels Lisa Marie and Long Beach Carnage, and uncrewed surface vehicles Renfree, Josiah S., Noelle M. Bowlin, Brad E. Erisman, Ramon Isaac Rojas-Gonzalez, Gabriel E. Johnson, Scott A. Mau, David W. Murfin, Brittany D. Schwartzkopf, Thomas S. Sessions, Kevin L. Stierhoff, Juan Roberto F. Vallarta-Zarate, Lanora Vasquez, William Watson, Juan P. Zwolinski, and David A. Demer U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-669. 47 p.
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The critically endangered vaquita is not doomed to extinction by inbreeding depression

Robinson, Jacqueline A. Robinson, Christopher C. Kyriazis, Sergio F. Nigenda-Morales, Annabel C. Beichman, Lorenzo Rojas-Bracho, Kelly M. Robertson, Michael C. Fontaine, Robert K. Wayne, Kirk E. Lohmueller, Barbara L. Taylor, and Phillip A. Morin
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Science 376(6593):635-639
https://doi.org/10.1126/science.abm1742
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1

Chaos is not rare in natural ecosystems

Rogers, Tanya L., Bethany J. Johnson, and Stephan B. Munch
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Nature Ecology and Evolution 6:1105-1111
https://doi.org/10.1038/s41559-022-01787-y
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2022Rogers
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More vaquita porpoises survive than expected

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Endangered Species Research 48:225-234
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1

Are US wild salmon products affected by farmed salmon? A cointegration analysis

Roll, Kristin H., Rune Nygaard, Benjamin Fissel, and James Hilger
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Marine Resource Economics 37(3):283-303
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1
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0

High mercury concentrations in steelhead/rainbow trout, sculpin, and terrestrial invertebrates in a stream-riparian food web in coastal California

Rundio, David E., Roberto Rivera, and Peter S. Weiss-Penzias
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Ecotoxicology 31:1506-1519
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0

Project report: Rockfish Recruitment and Ecosystem Assessment (NOAA Ship Reuben Lasker, RL-22-02, April 28 - June 16, 2022)

Sakuma, Keith
2022
NOAA Fisheries, Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. 17 p.
https://doi.org/10.25923/dpa1-7v84
Project report: Rockfish Recruitment and Ecosystem Assessment (NOAA Ship Reuben Lasker, RL-22-02, April 28 - June 16, 2022) Sakuma, Keith NOAA Fisheries, Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. 17 p.
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Utilizing equitable and inclusive design principles to promote STEM identity of community college transfer students

Santiago, Nicholas A., Carolyn Gee, Shanna L. Howard, Jocelyn M. Macho, and Mercedes Pozo Buil
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In: Scott Seagroves et al. (eds.), Leaders in effective and inclusive STEM: Twenty years of the Institute for Scientist and Engineer Educators, p. 91-114. University of California Santa Cruz, Institute for Scientist and Engineer Educators. https://escholarship.org/uc/item/2kz8h9s7
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0

Strontium isotopes in otoliths reveal a diversity of natal origins for Tarek (Alburnus tarichi) in Lake Van, Turkey

Saygin, Semra, Nazmi Polat, Malte Willmes, Levi S. Lewis, James A. Hobbs, Ataman Altug Atici, and Mahmut Elp
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Fisheries Research 255:106441 (9 p.)
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Strontium isotopes in otoliths reveal a diversity of natal origins for Tarek (Alburnus tarichi) in Lake Van, Turkey Saygin, Semra, Nazmi Polat, Malte Willmes, Levi S. Lewis, James A. Hobbs, Ataman Altug Atici, and Mahmut Elp Fisheries Research 255:106441 (9 p.)
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Habitat compression indices for monitoring ocean conditions and ecosystem impacts within coastal upwelling systems

Schroeder, Isaac D., Jarrod A. Santora, Nate Mantua, John C. Field, Brian K. Wells, Elliott L. Hazen, Michael Jacox, Steven J. Bograd
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Ecological Indicators 144:109520 (12 p.)
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Schultz, Emma A., Erin L. LaCasella, Kemit-Amon Lewis, Dionne L. Hoskins-Brown, and Peter H. Dutton
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Chelonian Conservation and Biology 21(1):106-111
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1

A summary report of life history information on the central subpopulation of Northern Anchovy (Engraulis mordax) for the 2021 stock assessment

Schwartzkopf, Brittany D., Emmanis Dorval, Kelsey C. James, Jonathan M. Walker, Owyn E. Snodgrass, Dianna L. Porzio, and Brad E. Erisman
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U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC 659. 76 p.
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High-frequency and long-term observations of eDNA from imperiled salmonids in a coastal stream: Temporal dynamics, relationships with environmental factors, and comparisons with conventional observations

Searcy, Ryan T., Alexandria B. Boehm, Chloe Weinstock, Christina M. Preston, Scott Jensen, Brent Roman, James M. Birch, Christopher A. Scholin, Kyle S. Van Houtan, Joseph D. Kiernan, and Kevan M. Yamahara
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0

Revenue loss due to whale entanglement mitigation and fishery closures

Seary, Rachel, Jarrod A. Santora, Desiree Tommasi, Andrew Thompson, Steven J. Bograd, Kate Richerson, Stephanie Brodie, and Dan Holland
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Scientific Reports 12:21554 (13 p.)
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Diversity in habitat use by White Sturgeon revealed using fin ray geochemistry

Sellheim, Kirsten, Malte Willmes, Levi S. Lewis, Jamie Sweeney, Joseph Merz, and James A. Hobbs
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Frontiers in Marine Science 9:859038 (18 p.)
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Chelonian Conservation and Biology, Volume 21, Issue 1: Covid, Chelonians, and a new "normal"

Seminoff, Jeffrey A.
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Chelonian Conservation and Biology 21(1):1
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1

Global decline in ocean memory over the 21st century

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Synthesizing integrated ecosystem research to create informed stock-specific indicators for next generation stock assessments

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0

mmrefpoints: Projecting long-term marine mammal abundance with bycatch

Siple, Margaret C., Andre E. Punt, Tessa B. Francis, Philip S. Hammond, Dennis Heinemann, Kristy J. Long, Jeffrey Moore, Maritza Sepulveda, Randall R. Reeves, Gudjon Mar Sigurdsson, Gisli Vikingsson, Paul R. Wade, Rob Williams, and Alexandre N. Zerbini
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1

Rapid recovery of depleted abalone in Isla Natividad, Baja California, Mexico

Smith, Alexandra, Juan Domingo Aguilar, Charles Boch, Giulio De Leo, Arturo Hernandez-Velasco, Stephanie Houck, Ramon Martinez, Stephen Monismith, Jorge Torre, C. Brock Woodson, and Fiorenza Micheli
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0

Projected novelty in the climate envelope of the California Current at multiple spatial-temporal scales

Smith, James A., Mercedes Poso Buil, Jerome Fiechter, Desiree Tommasi, and Michael G. Jacox
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PLoS Climate 1(4):e0000022 (19 p.)
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New management unit for conservation of the Endangered green turtle Chelonia mydas at the Xisha (Paracel) Islands, South China Sea

Song, Jia-hao, Bai-an Lin, Yu-yan Jia, Peter H. Dutton, Bin Kang, George H. Balazs, and Min Liu
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Endangered Species Research 47:145-154
https://doi.org/10.3354/esr01172
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1

2022 highly migratory species annual report

Southwest Fisheries Science Center
2022
U.S. Department of Commerce, NOAA Southwest Fisheries Science Center, Administrative Report LJ-22-02. 25 p.
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0

Can remote sensing fill the United States' monitoring gap for watershed management?

Sridharan, Vamsi Krishna, Saurav Kumar, and Swetha Madhur Kumar
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Water 14(13):1985 (16 p.)
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0

Assessing marine endocrine-disrupting chemicals in the critically endangered California condor: implications for reintroduction to coastal environments

Stack, Margaret E., Jennifer M. Cossaboon, Christopher W. Tubbs, L. Ignacio Vilchis, Rachel G. Felton, Jade L. Johnson, Kerri Danil, Gisela Heckel, Eunha Hoh, and Nathan G. Dodder
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Environmental Science and Technology 56(12):7800-7809
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1

Larger females have more calves: influence of maternal body length on fecundity in North Atlantic right whales

Stewart, Joshua D., John W. Durban, Hollis Europe, Holly Fearnbach, Philip K. Hamilton, Amy R. Knowlton, Morgan S. Lynn, Carolyn A. Miller, Wayne L. Perryman, Brandon W.H. Tao, and Michael J. Moore
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Marine Ecology Progress Series 689:179-189
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0
1

Small angle x-ray scattering and x-ray diffraction of shark mineralized tissue [abstract]

Stock, Stuart, Jun-Sang Park, Jonathan Almer, Kelsey James, Michelle Passerotti, and Lisa Natanson
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Abstracts of the 2022 American Crystallographic Association Meeting (Portland, Oregon, 29 July - 3 August 2022. Acta Crystallographica A 78(supp.):a60
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1
0
0

Bayesian prediction of fishery biological impacts from limited data: A deep-set buoy gear case study

Stohs, Stephen M., and Karter M. Harmon
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Fisheries Research 249:106228 (13 p.)
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Floodplain trophic subsidies in a modified river network: managed foodscapes of the future?

Sturrock, Anna M., Mollie Ogaz, Kelly Neal, Nicholas J. Corline, Ryan Peek, Dana Myers, Sierra Schluep, Marissa Levinson, Rachel C. Johnson, and Carson A. Jeffres
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0

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Suca, Justin J., Jarrod A. Santora, John C. Field, K. Alexandra Curtis, Barbara A. Muhling, Megan A. Cimino, Elliott L. Hazen, and Steven J. Bograd
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ICES Journal of Marine Science 79(9):2489-2509
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0
1

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Suca, Justin J., Rubao Ji, Hannes Baumann, Kent Pham, Tammy L. Silva, David N. Wiley, Zhixuan Feng, and Joel K. Llopiz
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Fisheries Oceanography 31(3):333-352
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0
0

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Thompson, Andrew R., Eric P. Bjorkstedt, Steven J. Bograd, Jennifer L. Fisher, Elliott L. Hazen, Andrew Leising, Jarrod A. Santora, Erin V. Satterthwaite, William J. Sydeman, Michaela Alksne, Toby D. Auth, Simone Baumann-Pickering, Noelle M. Bowlin, Brian J. Burke, Elizabeth A. Daly, Heidi Dewar, John C. Field, Newell T. Garfield, Ashlyn Giddings, Ralf Goericke, John Hildebrand, Cheryl A. Horton, Kym C. Jacobson, Michael G. Jacox, Jaime Jahncke, Michael Johns, Joshua Jones, Raphe M. Kudela, Sharon R. Melin, Cheryl A. Morgan, Catherine F. Nickels, Rachael A. Orben, Jessica M. Porquez, Elan J. Portner, Antonella Preti, Roxanne R. Robertson, Daniel L. Rudnick, Keith M. Sakuma, Isaac D. Schroeder, Owyn E. Snodgrass, Sarah Ann Thompson, Jennifer S. Trickey, Pete Warzybok, William Watson, and Edward D. Weber
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Predator life history and prey ontogeny limit natural selection on the major armour gene, Eda, in threespine stickleback

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Applying empirical dynamic modeling to distinguish abiotic and biotic drivers of population fluctuations in sympatric fishes

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A biogeographical assessment of deep-sea coral assemblages from coastwide visual surveys off California

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Multistressor global change drivers reduce hatch and viability of Lingcod embryos, a benthic egg layer in the California Current System

Willis-Norton, Ellen, Mark H. Carr, Elliott L. Hazen, and Kristy J. Kroeker
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Wilson, Cara, and Dale Robinson
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In: IGARSS 2022 - 2022 IEEE International Geoscience and Remote Sensing Symposium: Proceedings (17-22 July, 2022, Kuala Lumpur, Malaysia), p. 4776-4778. Institute of Electrical and Electronics Engineers (IEEE)
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Spies in the deep: Ocean landers explore the deep sea

Yang, Haleigh T., Kevin Hardy, Nicholas C. Wegner, Ashley Nicoll, Lisa A. Levin, and Natalya D. Gallo
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Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi)

Young, Matthew J., Veronica Larwood, Justin K. Clause, Miranda Bell-Tilcock, George Whitman, Rachel Johnson, and Frederick Feyrer
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Canadian Journal of Fisheries and Aquatic Sciences 79(1):21-30
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Ocean connectivity drives trophic support for consumers in an intermittently closed coastal lagoon

Young, Matthew, Frederick Feyrer, Darren Fong, Rachel Johnson, Tamara Kraus, Veronica Larwood, Elizabeth Stumpner, and Megan Young
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Estimating abundance of an elusive cetacean in a complex environment: Harbor porpoises (Phocoena phocoena) in inland waters of Southeast Alaska

Zerbini, Alexandre N., Kimberly T. Goetz, Karin A. Forney, and Charlotte Boyd
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Frontiers in Marine Science 9:966489 (13 p.)
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Population genetics and species distribution modeling highlight conservation needs of the endemic trout from the Northern Sierra Madre Occidental

Abadia-Cardoso, A., R. Hernandez-Guzman, A. Varela-Romero, J.C. Garza, and F.J. Garcia-De Leon
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Are long-term changes in mixed layer depth influencing North Pacific marine heatwaves?

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Social and economic outcomes of fisheries certification: Characterizing pathways of change in canned fish markets

Anderson, Christopher M., Amber Himes-Cornell, Cristina Pita, Ashleigh Arton, Margaux Favret, Dan Averill, Stephen Stohs, and Catherine Sarah Longo
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Genomic signatures of divergent selection are associated with social behaviour for spinner dolphin ecotytpes

Andrews, Kimberly R., Brendan Epstein, Matthew S. Leslie, Paul Fiedler, Phillip A. Morin, and A. Rus Hoelzel
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Molecular Ecology 30(9):1993-2008
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Alternative migratory strategies are widespread in subyearling Chinook salmon

Apgar, Travis M., Joseph E. Merz, Benjamin T. Martin, and Eric P. Palkovacs
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Ecology of Freshwater Fish 30(1):125-139
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Assessing information-sharing networks within small-scale fisheries and the implications for conservation interventions

Arlidge, William N.S., Josh A. Firth, Joanna Alfaro-Shigueto, Bruno Ibanez-Erquiaga, Jeffrey C. Mangel, Dale Squires, and E.J. Milner-Gulland
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Royal Society Open Science 8(11):211240 (16 p.)
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