NOAA FISHERIES

Effort changes around a marine reserve: The case of the California Rockfish Conservation Area Mason, Janet, Rosemary Kosaka, Aaron Mamula, and Cameron Speir Marine Policy 36(5):1054-1063

Onset of melanophore patterns in the head region of Chinook salmon: a natural marker for the reidentification of individual fish Merz, Joseph E., Paul Skvorc, Susan M. Sogard, Clark Watry, Scott M. Blankenship, and Erwin E. Van Nieuwenhuyse North American Journal of Fisheries Management 32(4):806-816

Trophic tangles through time? Opposing direct and indirect effects of an invasive omnivore on stream ecosystem processes Moore, Jonathan W., Stephanie M. Carlson, Laura A. Twardochleb, Jason L. Hwan, Justin M. Fox, and Sean A. Hayes PLoS ONE 7(11):e50687 (10 p.)

Sacramento River winter Chinook cohort reconstruction: analysis of ocean fishery impacts O'Farrell, Michael R., Michael S. Mohr, Allen M. Grover, and William H. Satterthwaite U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-491. 68 p.

The Winter-Run Harvest Model (WRHM) O'Farrell, Michael R., Shanae D. Allen, and Michael S. Mohr U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-489. 17 p.

California coastal Chinook salmon: status, data, and feasibility of alternative fishery management strategies O'Farrell, Michael R., William H. Satterthwaite, and Brian C. Spence U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-494. 29 p.

Pacific coast groundfish 5-year review of essential fish habitat. Report to the Pacific Fishery Management Council, Phase 1: New information. Pacific Fishery Management Council (Pacific Coast Groundfish Essential Fish Habitat Review Committee) Pacific Fishery Management Council, Portland, Oregon. 427 p.

Review of 2011 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 352 p.

Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2012 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 126 p.

Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2012 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 69 p.

Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2012 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 40 p.

Estimating escapement for a low-abundance steelhead population using dual-frequency identification sonar (DIDSON) Pipal, Kerrie A., Jeremy J. Notch, Sean A. Hayes, and Peter B. Adams North American Journal of Fisheries Management 32(5):880-893

Discovery and characterization of a large number of diagnostic markers to discriminate Oncorhynchus mykiss and O. clarkii Pritchard, V.L., A. Abadia-Cardoso, and J.C. Garza Molecular Ecology Resources 12(5):918-931

Differences in timing of migration and response to sexual signalling drive asymmetric hybridization across a migratory divide Ruegg, K., E.C. Anderson, and H. Slabbekoorn Journal of Evolutionary Biology 25(9):1741-1750

Reciprocal fluxes of stream and riparian invertebrates in a coastal California basin with Mediterranean climate Rundio, David E., and Steven T. Lindley Ecological Research 27(3):539-550

Male-biased sex ratio of nonanadromous Oncorhynchus mykiss in a partially migratory population in California Rundio, David E., Thomas H. Williams, Devon E. Pearse, and Steven T. Lindley Ecology of Freshwater Fish 21(2):293-299

Thermal legacies: transgenerational effects of temperature on growth in a vertebrate Salinas, Santiago, and Stephan B. Munch Ecology Letters 15(2):159-163

The response of correlated traits following cessation of fishery-induced selection Salinas, Santiago, Kestrel O. Perez, Tara A. Duffy, Stephen J. Sabatino, Lyndie A. Hice, Stephan B. Munch, and David O. Conover Evolutionary Applications 5(7):657-663

Habitat use of hourglass dolphins near the South Shetland Islands, Antarctica Santora, Jarrod A. Polar Biology 35(5):801-806

Spatial ecology of krill, micronekton and top predators in the central California Current: Implications for defining ecologically important areas Santora, Jarrod A., John C. Field, Isaac D. Schroeder, Keith M. Sakuma, Brian K. Wells, and William J. Sydeman Progress in Oceanography 106:154-174

Krill space: a comparative assessment of mesoscale structuring in polar and temperate marine ecosystems Santora, Jarrod A., William J. Sydeman, Isaac D. Schroeder, Christian S. Reiss, Brian K. Wells, John C. Field, Anthony M. Cossio, and Valerie J. Loeb ICES Journal of Marine Science 69(7):1317-1327

State-dependent migration timing and use of multiple habitat types in anadromous salmonids Satterthwaite, William H., Sean A. Hayes, Joseph E. Merz, Susan M. Sogard, Danielle M. Frechette, and Marc Mangel Transactions of the American Fisheries Society 141(3):781-794

A Bayesian hierarchical model of size-at-age in ocean-harvested stocks: quantifying effects of climate and temporal variability Satterthwaite, William Hallowell, Michael Steven Mohr, Michael Robert O'Farrell, and Brian Kenneth Wells Canadian Journal of Fisheries and Aquatic Sciences 69(5):942-954

Estimating species composition and quantifying uncertainty in multispecies fisheries: hierarchical Bayesian models for stratified sampling protocols with missing data Shelton, Andrew O., E.J. Dick, Donald E. Pearson, Stephen Ralston, and Marc Mangel Canadian Journal of Fisheries and Aquatic Sciences 69:(2) 231-246

Maternal age, fecundity, egg quality, and recruitment: linking stock structure to recruitment using an age-structured Ricker model Shelton, Andrew O., Stephan B. Munch, David Keith, and Marc Mangel Canadian Journal of Fisheries and Aquatic Sciences 69(10):1631-1641

Combining a Bayesian nonparametric method with a hierarchical framework to estimate individual and temporal variation in growth Sigourney, Douglas B., Stephan B. Munch, and Benjamin H. Letcher Ecological Modelling 247:125-134

Contrasts in habitat characteristics and life history patterns of Oncorhynchus mykiss in California's central coast and Central Valley Sogard, Susan M., Joseph E. Merz, William H. Satterthwaite, Michael P. Beakes, David R. Swank, Erin M. Collins, Robert G. Titus, and Marc Mangel Transactions of the American Fisheries Society 141(3):747-760

Updates to biological viability criteria for threatened steelhead populations in the North-Central California Coast Recovery Domain Spence, Brian C., Eric P. Bjorkstedt, Sara Paddock, and Leora Nanus National Marine Fisheries Service, Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. 15 p.

Scientific conclusions of the status review for Oregon coast coho salmon (Oncorhynchus kisutch) Stout, Heather A., Peter W. Lawson, Daniel L. Bottom, Thomas D. Cooney, Michael J. Ford, Chris E. Jordan, Robert G. Kope, Lance M. Kruzic, George R. Pess, Gordon H. Reeves, Mark D. Scheuerell, Thomas C. Wainwright, Robin S. Waples, Eric Ward, Laurie A. Weitkamp, John G. Williams, and Thomas A. Williams U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-118. 242 p.

Detecting causality in complex ecosystems Sugihara, George, Robert May, Hao Ye, Chih-hao Hsieh, Ethan Deyle, Michael Fogarty, and Stephan Munch Science 338(6106):496-500

Spatial and temporal scale of density-dependent body growth and its implications for recruitment, population dynamics and management of stream-dwelling salmonid populations Vincenzi, Simone, William Hallowell Satterthwaite, and Marc Mangel Reviews in Fish Biology and Fisheries 22(3):813-825

Population dynamics of Chinook salmon Oncorhynchus tshawytscha relative to prey availability in the central California coastal region Wells, Brian K., Jarrod A. Santora, John C. Field, R. Bruce MacFarlane, Baldo B. Marinovic, and William J. Sydeman Marine Ecology Progress Series 457:125-137

Management Strategy Evaluation for Sacramento River winter Chinook salmon Winship, Arliss J., Michael R. O'Farrell, and Michael S. Mohr Report to the U.S. National Marine Fisheries Service, Southwest Region, Long Beach, California. 85 p.

The Ascension-Monterey Canyon System: Habitats of demersal fishes and macroinvertebrates along the central California coast of the USA Yoklavich, Mary, and H. Gary Greene In: Peter T. Harris and Elaine K. Baker (eds.), Seafloor geomorphology as benthic habitat: GeoHAB atlas of seafloor geomorphic features and benthic habitats, p. 739-749. Elsevier.

Discovery and characterization of single-nucleotide polymorphisms in steelhead/rainbow trout, Oncorhynchus mykiss Abadia-Cardoso, Alicia, Anthony J. Clemento, and John Carlos Garza Molecular Ecology Resources 11(Suppl.1):31-49

California coastal salmonid population monitoring: strategy, design, and methods Adams, Peter B., L.B. Boydstun, Sean P. Gallagher, Michael K. Lacy, Trent McDonald, and Kevin E. Shaffer California Department of Fish and Game, Fish Bulletin 180 (82 p.)

Freshwater and marine habitat communities Adams, Peter, Scott VanderKooi, and Thomas Williams In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 111-121. U.S. Geological Survey, Open File Report 2011-1196.

Selecting and evaluating indicators for the California Current Andrews, Kelly S., Gregory D. Williams, Isaac C. Kaplan, Nick Tolimieri, Jameal F. Samhouri, Phillip S. Levin, Brian K. Wells, Steven J. Bograd, Churchill B. Grimes, Elliot L. Hazen, David Huff, Steven T. Lindley, and Isaac D. Schoeder In: Levin, Phillip S., and Franklin B. Schwing (eds.), Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health, p. 7-59. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109.

How useful is the ratio of fish density outside versus inside no-take marine reserves as a metric for fishery management control rules? Babcock, Elizabeth A., and Alec D. MacCall Canadian Journal of Fisheries and Aquatic Sciences 68(2):343-359

Freshwater survival of stranded steelhead kelts in coastal central California streams Barnett, Lewis A.K., and Brian C. Spence North American Journal of Fisheries Management 31(4):757-764

Calculating acceptable biological catch for stocks that have reliable catch data only (Only Reliable Catch Stocks - ORCS) Berkson, Jim, Luiz Barbieri, Steve Cadrin, Shannon Cass-Calay, Paul Crone, Martin Dorn, Claudia Friess, Donald Kobayashi, Thomas J. Miller, Wesley S. Patrick, Sarah Pautzke, Stephen Ralston, and Michael Trianni NOAA Technical Memorandum NMFS-SEFSC-616. 44 p.

State of the California Current 2010-2011: Regionally variable responses to a strong (but fleeting?) La Nina Bjorkstedt, Eric P., Ralf Goericke, Sam McClatchie, Ed Weber, William Watson, Nancy Lo, Bill Peterson, Bob Emmett, Ric Brodeur, Jay Peterson, Marisa Litz, Jose Gomez-Valdes, Gilberto Gaxiola-Castro, Bertha Lavaniegos, Francisco Chavez, Curtis A. Collins, John Field, Keith Sakuma, Steven J. Bograd, Franklin B. Schwing, Pete Warzybok, Russell Bradley, Jaime Jahncke, Gregory S. Campbell, John A. Hildebrand, William J. Sydeman, Sarah Ann Thompson, John L. Largier, Chris Halle, Sung Yong Kim, and Jeff Abell CalCOFI Reports 52:36-68

Winter and summer upwelling modes and their biological importance in the California Current Ecosystem Black, Bryan A., Isaac D. Schroeder, William J. Sydeman, Steven J. Bograd, Brian K. Wells, and Franklin B. Schwing Global Change Biology 17(8):2536-2545

Klamath River thermal refugia as critical habitat for threatened juvenile salmonids [abstract] Brewitt, K., E. Danner, S. Lindley, and A. Pike In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 273-274. U.S. Geological Survey, Open File Report 2011-1196.

Weakened portfolio effect in a collapsed salmon population complex Carlson, Stephanie Marie, and William Hallowell Satterthwaite Canadian Journal of Fisheries and Aquatic Sciences 68(9):1579-1589

Size at release, size-selective mortality, and age at maturity of Willamette River hatchery yearling Chinook salmon Claiborne, Andrew M., Joseph P. Fisher, Sean A. Hayes, and Robert L. Emmett Transactions of the American Fisheries Society 140(4):1135-1144

Discovery and characterization of single nucleotide polymorphisms in Chinook salmon, Oncorhynchus tshawytscha Clemento, A.J., A. Abadia-Cardoso, H.A. Starks, and J.C. Garza Molecular Ecology Resources 11(Suppl.1):50-66

An approach to defining stock complexes for U.S. west coast groundfishes using vulnerabilities and ecological distributions Cope, Jason M., John DeVore, E.J. Dick, Kelly Ames, John Budrick, Daniel L. Erickson, Joanna Grebel, Gretchen Hanshew, Robert Jones, Lynn Mattes, and Corey Niles North American Journal of Fisheries Management 31(4):589-604

Red snapper management in the Gulf of Mexico: science- or faith-based? Cowan, J.H., Jr., C.B. Grimes, W.F. Patterson III, C.J. Walters, A.C. Jones, W.J. Lindberg, D.J. Sheehy, W.E. Pine III, J.E. Powers, M.D. Campbell, K.C. Lindeman, S.L. Diamond, R. Hilborn, H.T. Gibson, and K.A. Rose Reviews in Fish Biology and Fisheries 21(2):187-204

Klamath River stream temperature modeling and use of thermal refugia by salmonids [abstract] Danner, E., S. Lindley, A. Pike, and K. Brewitt In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 259-260. U.S. Geological Survey, Open File Report 2011-1196.

Cowcod status report Dick, E.J. Report to the Pacific Fishery Management Council, Portland, Oregon. 17 p.

Depletion-Based Stock Reduction Analysis: A catch-based method for determining sustainable yields for data-poor fish stocks Dick, E.J., and Alec D. MacCall Fisheries Research 110(2):331-341

Status of greenspotted rockfish, Sebastes chlorostictus, in U.S. waters off California Dick, E.J., Don Pearson, and Steve Ralston Report to the Pacific Fishery Management Council, Portland, Oregon. 340 p.

Predation on juvenile Pacific salmon Oncorhynchus spp. in downstream migrant traps in Prairie Creek, California Duffy, Walter G., Eric P. Bjorkstedt, and Christopher S. Ellings North American Journal of Fisheries Management 31(1):151-164

Status of bocaccio, Sebastes paucispinis, in the Conception, Monterey and Eureka INPFC areas as evaluated for 2011 Field, John C. Report to the Pacific Fishery Management Council, Portland, Oregon. 144 p.

Status of the blackgill rockfish, Sebastes melanostomus, in the Conception and Monterey INPFC areas for 2011 Field, John C., and Don Pearson Report to the Pacific Fishery Management Council, Portland, Oregon. 311 p.

Application of a method for estimating effective population size and admixture using diagnostic single nucleotide polymorphisms (SNPs): implications for conservation of threatened Paiute cutthroat trout (Oncorhynchus clarkii seleniris) in Silver King Creek, California Finger, Amanda J., Eric C. Anderson, Molly R. Stephens, and Bernard P. May Canadian Journal of Fisheries and Aquatic Sciences 68(8):1369-1386

Effects of myxozoa disease on population dynamics of Klamath fall Chinook salmon [abstract] Fujiwara, M., A. Greenberg, and M.S. Mohr In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 236. U.S. Geological Survey, Open File Report 2011-1196.

Effects of ceratomyxosis on population dynamics of Klamath fall-run Chinook salmon Fujiwara, Masami, Michael S. Mohr, Aaron Greenberg, J. Scott Foott, and Jerri L. Bartholomew Transactions of the American Fisheries Society 140(5):1380-1391

Human influence on the spatial structure of threatened Pacific salmon metapopulations Fullerton, Aimee H., Steven T. Lindley, George R. Pess, Blake E. Feist, E. Ashley Steel, and Paul McElhany Conservation Biology 25(5):932-944

Detecting and forecasting complex nonlinear dynamics in spatially structured catch-per-unit-effort time series for North Pacific albacore (Thunnus alalunga) Glaser, Sarah M., Hao Ye, Mark Maunder, Alec MacCall, Michael Fogarty, and George Sugihara Canadian Journal of Fisheries and Aquatic Sciences 68(3):400–412

Regional and seasonal patterns of epipelagic fish assemblages from the central California Current Harding, Jeffrey A., Arnold J. Ammann, and R. Bruce MacFarlane Fishery Bulletin (U.S.) 109(3):261-281

Modeling growth and reproduction of chilipepper rockfish under variable environmental conditions Harvey, Chris J., John C. Field, Sabrina G. Beyer, and Susan M. Sogard Fisheries Research 109(1):187-200

Down, up, down and "smolting" twice? Seasonal movement patterns by juvenile steelhead (Oncorhynchus mykiss) in coastal watershed with bar closing estuary Hayes, Sean A., Morgan H. Bond, Chad V. Hanson, Andrew W. Jones, Arnold J. Ammann, Jeffrey A. Harding, Alison L. Collins, Jeffrey Perez, and R. Bruce MacFarlane Canadian Journal of Fisheries and Aquatic Sciences 68(8):1341-1350

Status of the California Current Ecosystem: major EBM drivers and pressures Hazen, Elliott L., William J. Sydeman, Isaac D. Schroeder, Sarah A. Thompson, Brian K. Wells, Steven T. Lindley, Churchill B. Grimes, Steven J. Bograd, and Franklin B. Schwing In: Levin, Phillip S., and Franklin B. Schwing (eds.), Technical background for an Integrated Ecosystem Assessment of the California Current: groundfish, salmon, green sturgeon, and ecosystem health, p. 99-110. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-109.

Status of the widow rockfish resource in 2011 He, Xi, Donald E. Pearson, E.J. Dick, John C. Field, Stephen Ralston, and Alec D. MacCall Report to the Pacific Fishery Management Council, Portland, Oregon. 317 p.

Interactions of age-dependent mortality and selectivity functions in age-based stock assessment models He, Xi, Stephen Ralston, and Alec D. MacCall Fishery Bulletin 109(2)198-216

Conceptual design and approach for modeling fall-run Chinook production post dam removal [abstract] Hendrix, N., S. Lindley, J. Hamilton, J. Simondet, and C. Huntington In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 217-218. U.S. Geological Survey, Open File Report 2011-1196.

Green sturgeon physical habitat use in the coastal Pacific Ocean Huff, David D., Steven T. Lindley, Polly S. Rankin, and Ethan A. Mora PLoS ONE 6(9):e25156 (12 p.)

Small founding number and low genetic diversity in an introduced species exhibiting limited invasion success (speckled dace, Rhinichthys osculus) Kinziger, Andrew P., Rodney J. Nakamoto, Eric C. Anderson, and Bret C. Harvey Ecology and Evolution 1(1):73-84

Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2010 run Klamath River Technical Team Klamath River Technical Team. 21 p.

Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2011 season Klamath River Technical Team Klamath River Technical Team. 37 p.

Electronic tagging of green sturgeon reveals population structure and movement among estuaries Lindley, Steven T., Daniel L. Erickson, Mary L. Moser, Greg Williams, Olaf P. Langness, Barry W. McCovey Jr., Michael Belchik, Dave Vogel, William Pinnix, John T. Kelly, Joseph C. Heublein, and A. Peter Klimley Transactions of the American Fisheries Society 140(1):108-122

Foreword MacCall, Alec D. In: A. Belgrano and C.W. Fowler (eds.), Ecosystem-based management for marine fisheries: an evolving perspective, p. xiii-xvi. Cambridge University Press.

The sardine-anchovy puzzle MacCall, Alec D. In: Jeremy B.C. Jackson, Karen E. Alexander, and Enric Sala (eds.), Shifting baselines: the past and future of ocean fisheries, p. 47-57. Island Press.

Exploration of a hybrid stock synthesis-VPA model of Pacific bluefin tuna to distinguish between trends in recruitment and changes in fishing intensity on young fish MacCall, Alec D., and Steven L.H. Teo Working document submitted to the ISC Pacific bluefin tuna Working Group, International Scientific Committee for Tuna and Tuna-Like Species in the North Pacific Ocean (ISC), 6-13 January 2011, Shimizu-ku, Shizuoka, Japan. ISC document no. ISC/11-1/PBFWG/01. 12 p.

Data-poor models for assessing gulf curvina and evaluating management alternatives MacCall, Alec, Brad Erisman, Ashley Apel, and Rod Fujita Report supporting a presentation at Ensenada, BCN, on 11 May, 2011. 10 p.

A microsatellite genome screen identifies chromosomal regions under differential selection in steelhead and rainbow trout Martinez, Andres, John Carlos Garza, and Devon E. Pearse Transactions of the American Fisheries Society 140(3):829-842

A note on the detection of the neurotoxin domoic acid in beach-stranded Dosidicus gigas in the Southern California Bight Mazzillo, Fernanda F.M., John C. Field, Danna J. Staaf, Melissa L. Carter, and Mark D. Ohman CalCOFI Reports 52:109-115

Can information from marine protected areas be used to inform control-rule-based management of small-scale, data-poor stocks? McGilliard, Carey R., Ray Hilborn, Alec MacCall, Andre E. Punt, and John C. Field ICES Journal of Marine Science 68(1):201-211

Nutrient fluxes and the recent collapse of coastal California salmon populations Moore, Jonathan W., Sean A. Hayes, Walter Duffy, Sean Gallagher, Cyril J. Michel, and David Wright Canadian Journal of Fisheries and Aquatic Sciences 68(7):1161-1170

Toward a national Animal Telemetry Observing Network (ATN) for our oceans, coasts and great lakes: workshop synthesis report (U.S. IOOS workshop, March 2011, Santa Cruz, California) Moustahfid, Hassan, Churchill Grimes, John Kocik, Barbara Block, Kim Holland, John Payne, Dewayne Fox, Andrew Seitz, and Charles Alexander U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-482. 51 p.

Final environmental assessment and initial regulatory impact review for Pacific Coast Salmon Plan Amendment 16: Classifying stocks, revising status determination criteria, establishing annual catch limits and accountability measures, and de minimis fishing provisions Pacific Fishery Management Council (Ad Hoc Salmon Amendment Committee) Regulatory Identifier Number 0648-BA55. Pacific Fishery Management Council, Portland, Oregon. 491 p.

Review of 2010 ocean salmon fisheries Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 335 p.

Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2011 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 123 p.

Preseason report II: Proposed alternatives and environmental assessment Part 2 for ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 58 p.

Preseason report III: Analysis of Council adopted management measures for 2011 ocean salmon fisheries Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 37 p.

Population genetics of Klamath Basin Oncorhynchus mykiss [abstract] Pearse, D., J.C. Garza, and M. Peterson In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 227. U.S. Geological Survey, Open File Report 2011-1196.

Disruption of historical patterns of isolation by distance in coastal steelhead Pearse, Devon E., Edith Martinez, and John Carlos Garza Conservation Genetics 12(3):691-700

Population structure and genetic divergence of coastal rainbow and redband trout in the upper Klamath basin Pearse, Devon E., Stephanie L. Gunckel, and Steven E. Jacobs Transactions of the American Fisheries Society 140(3):587-597

The Salmon Monitoring Advisor: a hierarchical web site to help design and implement salmon monitoring programs [abstract] Peterman, R.M., P.B. Adams, B. Dorner, D.L. Drake, H.J. Geiger, K. Holt, C. Jordan, D.P. Larsen, S.A. Leider, R.H. Lincoln, A.R. Olsen, C.K. Parken, J.D. Rodgers, and S. Walbridge In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 271. U.S. Geological Survey, Open File Report 2011-1196.

Use of dual frequency identification sonar (DIDSON) to estimate low abundance salmonid escapement in California watersheds [abstract] Pipal, K., M. Jessop, and P. Adams In: Lyman Thorsteinson, Scott VanderKooi, and Walter Duffy (eds.), Proceedings of the Klamath Basin Science Conference (Medford, Oregon, February 1-5, 2010), p. 270. U.S. Geological Survey, Open File Report 2011-1196.

NMFS Southwest Fisheries Science Center: Draft agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee Ralston, Stephen (ed.), E.J. Dick, John Field, Alec MacCall, Donald Pearson, Ole Shelton, William Watson, and Mary Yoklavich In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 52nd annual meeting of the TSC (May 3-4, 2011, Astoria, Oregon), p. 219-238. Pacific States Marine Fisheries Commission.

A meta-analytic approach to quantifying scientific uncertainty in stock assessments Ralston, Stephen, Andre E. Punt, Owen S. Hamel, John D. DeVore, and Ramon J. Conser Fishery Bulletin 109(2):217-231

Spatial organization of krill and seabirds in the central California Current Santora, Jarrod A., Stephen Ralston, and William J. Sydeman ICES Journal of Marine Science 68(7):1391-1402

Mesoscale structure and oceanographic determinants of krill hotspots in the California Current: Implications for trophic transfer and conservation Santora, Jarrod A., William J. Sydeman, Isaac D. Schroeder, Brian K. Wells, and John C. Field Progress in Oceanography 91(4):397-409

Summary of genetic data collected for rapid response Chinook salmon assignment, and evaluation of new markers and assignment tools: Report for FY 2010 Smith, Christian, Denise Hawkins, and John Carlos Garza Report submitted to the Coleman National Fish Hatchery, Anderson, California (updated August 10, 2011). 29 p.

Interannual variability in growth rates of early juvenile sablefish and the role of environmental factors Sogard, Susan M. Bulletin of Marine Science 87(4):857-872

An evaluation of the significance of climate forcing on time-varying growth and fecundity of rockfish in the California Current (Final report) Sogard, Susan, John Field, Chris Harvey, and Sabrina Beyer Report to NOAA Fisheries and the Environment (FATE) program, Project 09-09. NOAA National Marine Fisheries Service, Silver Spring, Maryland. 21 p.

Status review update for Pacific salmon and steelhead listed under the Endangered Species Act: Central California Coho Coast Salmon ESU Spence, Brian C., and Thomas H. Williams U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-475. 15 p.