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SWFSC Publications Search

The SWFSC publications website serves as an archival repository of documents published and/or authored by SWFSC staff and funded partners. As a repository, the SWFSC publications website retains documents in their original published format to ensure public access to scientific information.

       

2,234 Search Result(s)

Division: Fisheries Ecology Division

Coastal pelagics and forage fishes

McClatchie, Sam, Richard D. Brodeur, John C. Field, Ed Weber, Andrew R. Thompson, Robert L. Emmett, Paul R. Crone, Kevin T. Hill, Caren Barcelo, and Brian K. Wells
2013
In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 374-399. U.S. NOAA National Marine Fisheries Service.
Coastal pelagics and forage fishes McClatchie, Sam, Richard D. Brodeur, John C. Field, Ed Weber, Andrew R. Thompson, Robert L. Emmett, Paul R. Crone, Kevin T. Hill, Caren Barcelo, and Brian K. Wells In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 374-399. U.S. NOAA National Marine Fisheries Service.
2013McClatchie
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Incorporating climate science in applications of the U.S. Endangered Species Act for aquatic species

McClure, Michelle M., Michael Alexander, Diane Borggaard, David Boughton, Lisa Crozier, Roger Griffis, Jeffrey C. Jorgensen, Steven T. Lindley, Janet Nye, Melanie J. Rowland, Erin E. Seney, Amy Snover, Christopher Toole, and Kyle Van Houtan
2013
Conservation Biology 27(6):1222-1233
https://doi.org/10.1111/cobi.12166
Incorporating climate science in applications of the U.S. Endangered Species Act for aquatic species McClure, Michelle M., Michael Alexander, Diane Borggaard, David Boughton, Lisa Crozier, Roger Griffis, Jeffrey C. Jorgensen, Steven T. Lindley, Janet Nye, Melanie J. Rowland, Erin E. Seney, Amy Snover, Christopher Toole, and Kyle Van Houtan Conservation Biology 27(6):1222-1233
2013McClure
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The effects of environmental factors on the migratory movement patterns of Sacramento River yearling late-fall run Chinook salmon (Oncorhynchus tshawytscha)

Michel, Cyril J., Arnold J. Ammann, Eric D. Chapman, Philip T. Sandstrom, Heidi E. Fish, Michael J. Thomas, Gabriel P. Singer, Steven T. Lindley, A. Peter Klimley, and R. Bruce MacFarlane
2013
Environmental Biology of Fishes 96(2-3):257-271
https://doi.org/10.1007/s10641-012-9990-8
The effects of environmental factors on the migratory movement patterns of Sacramento River yearling late-fall run Chinook salmon (Oncorhynchus tshawytscha) Michel, Cyril J., Arnold J. Ammann, Eric D. Chapman, Philip T. Sandstrom, Heidi E. Fish, Michael J. Thomas, Gabriel P. Singer, Steven T. Lindley, A. Peter Klimley, and R. Bruce MacFarlane Environmental Biology of Fishes 96(2-3):257-271
2013Michel
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Coded wire tag expansion factors for Chinook salmon carcass surveys in California: estimating the numbers and proportions of hatchery-origin fish

Mohr, Michael S., and William H. Satterthwaite
2013
San Francisco Estuary and Watershed Science 11(4):3 (17 p.)
https://doi.org/10.15447/sfews.2013v11iss4art3
Coded wire tag expansion factors for Chinook salmon carcass surveys in California: estimating the numbers and proportions of hatchery-origin fish Mohr, Michael S., and William H. Satterthwaite San Francisco Estuary and Watershed Science 11(4):3 (17 p.)
2013Mohr
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Documentation of a relational database for the Oregon Sport Groundfish onboard Sampling Program

Monk, Melissa, E.J. Dick, Troy Buell, Linda ZumBrunnen, Alison Dauble, and Don Pearson
2013
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-519. 69 p.
Documentation of a relational database for the Oregon Sport Groundfish onboard Sampling Program Monk, Melissa, E.J. Dick, Troy Buell, Linda ZumBrunnen, Alison Dauble, and Don Pearson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-519. 69 p.
2013Monk
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Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography

Moran, Paul, David J. Teel, Michael A. Banks, Terry D. Beacham, M. Renee Bellinger, Scott M. Blankenship, John R. Candy, John Carlos Garza, Jon E. Hess, Shawn R. Narum, Lisa W. Seeb, William D. Templin, Colin G. Wallace, and Christian T. Smith
2013
Canadian Journal of Fisheries and Aquatic Sciences 70(3):415-435
https://doi.org/10.1139/cjfas-2012-0135
Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeography Moran, Paul, David J. Teel, Michael A. Banks, Terry D. Beacham, M. Renee Bellinger, Scott M. Blankenship, John R. Candy, John Carlos Garza, Jon E. Hess, Shawn R. Narum, Lisa W. Seeb, William D. Templin, Colin G. Wallace, and Christian T. Smith Canadian Journal of Fisheries and Aquatic Sciences 70(3):415-435
2013Moran
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Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach

Moyle, Peter B., Joseph D. Kiernan, Patrick K. Crain, and Rebecca M. Quinones
2013
PLoS ONE 8(5):e63883 (12 p.)
https://doi.org/10.1371/journal.pone.0063883
Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach Moyle, Peter B., Joseph D. Kiernan, Patrick K. Crain, and Rebecca M. Quinones PLoS ONE 8(5):e63883 (12 p.)
2013Moyle
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Climate change and ocean ecology of northwest steelhead

Myers, Kate, and Nate Mantua
2013
The Osprey 75:1, 4-7
Climate change and ocean ecology of northwest steelhead Myers, Kate, and Nate Mantua The Osprey 75:1, 4-7
2013Myers
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Groundfish Essential Fish Habitat synthesis: A report to the Pacific Fishery Management Council

National Marine Fisheries Service
2013
NOAA National Marine Fisheries Service, Northwest Fisheries Science Center, Seattle, Washington. 485 p.
Groundfish Essential Fish Habitat synthesis: A report to the Pacific Fishery Management Council National Marine Fisheries Service NOAA National Marine Fisheries Service, Northwest Fisheries Science Center, Seattle, Washington. 485 p.
2013NMFS
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Mission statement and five-year plan: Coho salmon captive broodstock program

National Marine Fisheries Service, Coho Salmon Captive Broodstock Program
2013
National Marine Fisheries Service, Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. 18 p.
Mission statement and five-year plan: Coho salmon captive broodstock program National Marine Fisheries Service, Coho Salmon Captive Broodstock Program National Marine Fisheries Service, Southwest Fisheries Science Center, Fisheries Ecology Division, Santa Cruz, California. 18 p.
2013NMFS2
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Research tools to investigate movements, migrations, and life history of sturgeons (Acipenseridae), with an emphasis on marine-oriented populations

Nelson, Troy C., Phaedra Doukakis, Steven T. Lindley, Andrea D. Schreier, Joseph E. Hightower, Larry R. Hildebrand, Rebecca E. Whitlock, and Molly A.H. Webb
2013
PLoS ONE 8(8):e71552 (22 p.)
https://doi.org/10.1371/journal.pone.0071552
Research tools to investigate movements, migrations, and life history of sturgeons (Acipenseridae), with an emphasis on marine-oriented populations Nelson, Troy C., Phaedra Doukakis, Steven T. Lindley, Andrea D. Schreier, Joseph E. Hightower, Larry R. Hildebrand, Rebecca E. Whitlock, and Molly A.H. Webb PLoS ONE 8(8):e71552 (22 p.)
2013Nelson
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The Sacramento Index (SI)

O'Farrell, Michael R., Michael S. Mohr, Melodie L. Palmer-Zwahlen, and Allen M. Grover
2013
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-512. 36 p.
The Sacramento Index (SI) O'Farrell, Michael R., Michael S. Mohr, Melodie L. Palmer-Zwahlen, and Allen M. Grover U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-512. 36 p.
2013OFarrell
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Chromosome rearrangements, recombination suppression, and limited segregation distortion in hybrids between Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (O. mykiss)

Ostberg, Carl O., Lorenz Hauser, Victoria L. Pritchard, John C. Garza, and Kerry A. Naish
2013
BMC Genomics 14:570 (16 p.)
https://doi.org/10.1186/1471-2164-14-570
Chromosome rearrangements, recombination suppression, and limited segregation distortion in hybrids between Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (O. mykiss) Ostberg, Carl O., Lorenz Hauser, Victoria L. Pritchard, John C. Garza, and Kerry A. Naish BMC Genomics 14:570 (16 p.)
2013Ostberg
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High predation on small populations: avian predation on imperiled salmonids

Osterback, Ann-Marie K., Danielle M. Frechette, Andrew O. Shelton, Sean A. Hayes, Morgan H. Bond, Scott A. Shaffer, and Jonathan W. Moore
2013
Ecosphere 4(9):116 (21 p.)
https://doi.org/10.1890/ES13-00100.1
High predation on small populations: avian predation on imperiled salmonids Osterback, Ann-Marie K., Danielle M. Frechette, Andrew O. Shelton, Sean A. Hayes, Morgan H. Bond, Scott A. Shaffer, and Jonathan W. Moore Ecosphere 4(9):116 (21 p.)
2013Osterback
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Review of 2012 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan

Pacific Fishery Management Council (Salmon Technical Team)
2013
Pacific Fishery Management Council, Portland, Oregon. 363 p.
Review of 2012 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 363 p.
2013Pacific1
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Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2013 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2013
Pacific Fishery Management Council, Portland, Oregon. 131 p.
Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2013 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 131 p.
2013Pacific2
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Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2013 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2013
Pacific Fishery Management Council, Portland, Oregon. 67 p.
Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2013 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 67 p.
2013Pacific3
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Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2013 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2013
Pacific Fishery Management Council, Portland, Oregon. 44 p.
Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2013 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 44 p.
2013Pacific4
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Pacific coast Fishery Ecosystem Plan for the U.S. portion of the California Current Large Marine Ecosystem

Pacific Fishery Management Council, Ecosystem Plan Development Team
2013
Pacific Fishery Management Council, Portland, Oregon (190 p.)
Pacific coast Fishery Ecosystem Plan for the U.S. portion of the California Current Large Marine Ecosystem Pacific Fishery Management Council, Ecosystem Plan Development Team Pacific Fishery Management Council, Portland, Oregon (190 p.)
2013Pacific5
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Nonparametric forecasting outperforms parametric methods for a simulated multispecies system

Perretti, Charles T., George Sugihara, and Stephan B. Munch
2013
Ecology 94(4):794-800
https://doi.org/10.1890/12-0904.1
Nonparametric forecasting outperforms parametric methods for a simulated multispecies system Perretti, Charles T., George Sugihara, and Stephan B. Munch Ecology 94(4):794-800
2013Perretti2
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Model-free forecasting outperforms the correct mechanistic model for simulated and experimental data

Perretti, Charles T., Stephan B. Munch, and George Sugihara
2013
Proceedings of the National Academy of Sciences of the United States of America 110(13):5253-5257
https://doi.org/10.1073/pnas.1216076110
Model-free forecasting outperforms the correct mechanistic model for simulated and experimental data Perretti, Charles T., Stephan B. Munch, and George Sugihara Proceedings of the National Academy of Sciences of the United States of America 110(13):5253-5257
2013Perretti
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Reply to Hartig and Dormann: The true model myth

Perretti, Charles T., Stephan B. Munch, and George Sugihara
2013
Proceedings of the National Academy of Sciences of the United States of America 110(42):E3976-E3977
https://doi.org/10.1073/pnas.1312461110
Reply to Hartig and Dormann: The true model myth Perretti, Charles T., Stephan B. Munch, and George Sugihara Proceedings of the National Academy of Sciences of the United States of America 110(42):E3976-E3977
2013Perretti3
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Sensitivity of survival to migration routes used by juvenile Chinook salmon to negotiate the Sacramento-San Joaquin River Delta

Perry, Russell W., Patricia L. Brandes, Jon R. Burau, A. Peter Klimley, Bruce MacFarlane, Cyril Michel, and John R. Skalski
2013
Environmental Biology of Fishes 96(2-3):381-392
https://doi.org/10.1007/s10641-012-9984-6
Sensitivity of survival to migration routes used by juvenile Chinook salmon to negotiate the Sacramento-San Joaquin River Delta Perry, Russell W., Patricia L. Brandes, Jon R. Burau, A. Peter Klimley, Bruce MacFarlane, Cyril Michel, and John R. Skalski Environmental Biology of Fishes 96(2-3):381-392
2013Perry
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Forecasting river temperatures in real time using a stochastic dynamics approach

Pike, Andrew, Eric Danner, David Boughton, Forrest Melton, Rama Nemani, Balaji Rajagopalan, and Steve Lindley
2013
Water Resources Research 49(9):5168-5182
https://doi.org/10.1002/wrcr.20389
Forecasting river temperatures in real time using a stochastic dynamics approach Pike, Andrew, Eric Danner, David Boughton, Forrest Melton, Rama Nemani, Balaji Rajagopalan, and Steve Lindley Water Resources Research 49(9):5168-5182
2013Pike
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Discovery and characterization of novel genetic markers for coastal cutthroat trout (Oncorhynchus clarkii clarkii)

Pritchard, Victoria L., and John Carlos Garza
2013
Conservation Genetics Resources 5(3):611-618
https://doi.org/10.1007/s12686-013-9863-2
Discovery and characterization of novel genetic markers for coastal cutthroat trout (Oncorhynchus clarkii clarkii) Pritchard, Victoria L., and John Carlos Garza Conservation Genetics Resources 5(3):611-618
2013Pritchard2
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Discovery and characterization of novel genetic markers for use in the management of Lahontan cutthroat trout (Oncorhynchus clarkii henshawi)

Pritchard, Victoria L., Nathan R. Campbell, Shawn R. Narum, Mary M. Peacock, and John Carlos Garza
2013
Molecular Ecology Resources 13(2):276-288
https://doi.org/10.1111/1755-0998.12040
Discovery and characterization of novel genetic markers for use in the management of Lahontan cutthroat trout (Oncorhynchus clarkii henshawi) Pritchard, Victoria L., Nathan R. Campbell, Shawn R. Narum, Mary M. Peacock, and John Carlos Garza Molecular Ecology Resources 13(2):276-288
2013Pritchard
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Interannual variation in pelagic juvenile rockfish (Sebastes spp.) abundance -- going with the flow

Ralston, S., K.M. Sakuma, and J.C. Field
2013
Fisheries Oceanography 22(4):288-308
https://doi.org/10.1111/fog.12022
Interannual variation in pelagic juvenile rockfish (Sebastes spp.) abundance -- going with the flow Ralston, S., K.M. Sakuma, and J.C. Field Fisheries Oceanography 22(4):288-308
2013Ralston
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Anomalous distributions of pelagic juvenile rockfish on the U.S. West Coast in 2005 and 2006

Ralston, Stephen, and Ian J. Stewart
2013
CalCOFI Reports 54:155-166
Anomalous distributions of pelagic juvenile rockfish on the U.S. West Coast in 2005 and 2006 Ralston, Stephen, and Ian J. Stewart CalCOFI Reports 54:155-166
2013Ralston2
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Marine mammals - Indicators and status

Redfern, Jessica V., Lisa T. Ballance, Jay P. Barlow, Susan J. Chivers, M. Bradley Hanson, Elliot L. Hazen, Isaac D. Schroeder, Jeff L. Laake, Mark S. Lowry, Sharon R. Melin, Jeffrey E. Moore, Dawn P. Noren, Wayne L. Perryman, Barbara L. Taylor, David W. Weller, and Brian K. Wells
2013
In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 339-373. U.S. NOAA National Marine Fisheries Service.
Marine mammals - Indicators and status Redfern, Jessica V., Lisa T. Ballance, Jay P. Barlow, Susan J. Chivers, M. Bradley Hanson, Elliot L. Hazen, Isaac D. Schroeder, Jeff L. Laake, Mark S. Lowry, Sharon R. Melin, Jeffrey E. Moore, Dawn P. Noren, Wayne L. Perryman, Barbara L. Taylor, David W. Weller, and Brian K. Wells In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 339-373. U.S. NOAA National Marine Fisheries Service.
2013Redfern2
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Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure

Ruegg, Kristen, Howard C. Rosenbaum, Eric C. Anderson, Marcia Engel, Anna Rothschild, C. Scott Baker, and Stephen R. Palumbi
2013
Conservation Genetics 14(1):103-114
https://doi.org/10.1007/s10592-012-0432-0
Long-term population size of the North Atlantic humpback whale within the context of worldwide population structure Ruegg, Kristen, Howard C. Rosenbaum, Eric C. Anderson, Marcia Engel, Anna Rothschild, C. Scott Baker, and Stephen R. Palumbi Conservation Genetics 14(1):103-114
2013Ruegg
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Photographic guide of pelagic juvenile rockfish (Sebastes spp.) and other fishes in mid-water trawl surveys off the coast of California

Sakuma, Keith M., Arnold J. Ammann, and Dale A. Roberts
2013
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-515. 48 p.
Photographic guide of pelagic juvenile rockfish (Sebastes spp.) and other fishes in mid-water trawl surveys off the coast of California Sakuma, Keith M., Arnold J. Ammann, and Dale A. Roberts U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-515. 48 p.
2013Sakuma2
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Distribution of pelagic juvenile rockfish (Sebastes spp.) in relation to temperature and fronts off central California

Sakuma, Keith M., Eric P. Bjorkstedt, and Stephen Ralston
2013
CalCOFI Reports 54:167-179
Distribution of pelagic juvenile rockfish (Sebastes spp.) in relation to temperature and fronts off central California Sakuma, Keith M., Eric P. Bjorkstedt, and Stephen Ralston CalCOFI Reports 54:167-179
2013Sakuma
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Stock Assessment Review (STAR) Panel report for aurora rockfish

Sampson, David, Chris Francis, John Field, and Yan Jiao
2013
Pacific Fishery Management Council, Portland, Oregon. 15 p.
Stock Assessment Review (STAR) Panel report for aurora rockfish Sampson, David, Chris Francis, John Field, and Yan Jiao Pacific Fishery Management Council, Portland, Oregon. 15 p.
2013Sampson1
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Stock Assessment Review (STAR) Panel report for rougheye (and blackspotted) rockfish

Sampson, David, Chris Francis, John Field, and Yan Jiao
2013
Pacific Fishery Management Council, Portland, Oregon. 16 p.
Stock Assessment Review (STAR) Panel report for rougheye (and blackspotted) rockfish Sampson, David, Chris Francis, John Field, and Yan Jiao Pacific Fishery Management Council, Portland, Oregon. 16 p.
2013Sampson2
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Growth, survival, and tag retention of steelhead trout (Oncorhynchus mykiss) and its application to survival estimates

Sandstrom, P.T., A.J. Ammann, C. Michel, G. Singer, E.D. Chapman, S. Lindley, R.B. MacFarlane, and A.P. Klimley
2013
Environmental Biology of Fishes 96(2-3):145-164
https://doi.org/10.1007/s10641-012-0051-0
Growth, survival, and tag retention of steelhead trout (Oncorhynchus mykiss) and its application to survival estimates Sandstrom, P.T., A.J. Ammann, C. Michel, G. Singer, E.D. Chapman, S. Lindley, R.B. MacFarlane, and A.P. Klimley Environmental Biology of Fishes 96(2-3):145-164
2013Sandstrom
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An introduction to the use of electronic tagging to provide insights into salmon migration and survival

Sandstrom, Philip T., R. Bruce MacFarlane, Steven T. Lindley, and A. Peter Klimley
2013
Environmental Biology of Fishes 96(2-3):131-133
https://doi.org/10.1007/s10641-012-0099-x
An introduction to the use of electronic tagging to provide insights into salmon migration and survival Sandstrom, Philip T., R. Bruce MacFarlane, Steven T. Lindley, and A. Peter Klimley Environmental Biology of Fishes 96(2-3):131-133
2013Sandstrom2
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Dynamic intra-seasonal habitat use by Antarctic fur seals suggests migratory hotspots near the Antarctic Peninsula

Santora, Jarrod A.
2013
Marine Biology 160(6):1383-1393
https://doi.org/10.1007/s00227-013-2190-z
Dynamic intra-seasonal habitat use by Antarctic fur seals suggests migratory hotspots near the Antarctic Peninsula Santora, Jarrod A. Marine Biology 160(6):1383-1393
2013Santora2
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Triple check: Observations verify structural realism of an ocean ecosystem model

Santora, Jarrod A., William J. Sydeman, Monique Messie, Fei Chai, Yi Chao, Sarah Ann Thompson, Brian K. Wells, and Francisco P. Chavez
2013
Geophysical Research Letters 40(7):1367-1372
https://doi.org/10.1002/grl.50312
Triple check: Observations verify structural realism of an ocean ecosystem model Santora, Jarrod A., William J. Sydeman, Monique Messie, Fei Chai, Yi Chao, Sarah Ann Thompson, Brian K. Wells, and Francisco P. Chavez Geophysical Research Letters 40(7):1367-1372
2013Santora
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Klamath-Trinity Basin fall run Chinook salmon scale age analysis evaluation

Satterthwaite, William H., Michael R. O'Farrell, and Michael S. Mohr
2013
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-522. 20 p.
Klamath-Trinity Basin fall run Chinook salmon scale age analysis evaluation Satterthwaite, William H., Michael R. O'Farrell, and Michael S. Mohr U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-522. 20 p.
2013Satterthwaite2
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A comparison of temporal patterns in the ocean spatial distribution of California's Central Valley Chinook salmon runs

Satterthwaite, William H., Michael S. Mohr, Michael R. O'Farrell, and Brian K. Wells
2013
Canadian Journal of Fisheries and Aquatic Sciences 70(4):574-584
https://doi.org/10.1139/cjfas-2012-0395
A comparison of temporal patterns in the ocean spatial distribution of California's Central Valley Chinook salmon runs Satterthwaite, William H., Michael S. Mohr, Michael R. O'Farrell, and Brian K. Wells Canadian Journal of Fisheries and Aquatic Sciences 70(4):574-584
2013Satterthwaite
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The North Pacific High and wintertime pre-conditioning of California current productivity

Schroeder, Isaac D., Bryan A. Black, William J. Sydeman, Steven J. Bograd, Elliott L. Hazen, Jarrod A. Santora, and Brian K. Wells
2013
Geophysical Research Letters 40(3):541-546
https://doi.org/10.1002/grl.50100
The North Pacific High and wintertime pre-conditioning of California current productivity Schroeder, Isaac D., Bryan A. Black, William J. Sydeman, Steven J. Bograd, Elliott L. Hazen, Jarrod A. Santora, and Brian K. Wells Geophysical Research Letters 40(3):541-546
2013Schroeder
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Separating intrinsic and environmental contributions to growth and their population consequences

Shelton, Andrew O., William H. Satterthwaite, Michael P. Beakes, Stephen B. Munch, Susan M. Sogard, and Marc Mangel
2013
American Naturalist 181(6):799-814
https://doi.org/10.1086/670198
Separating intrinsic and environmental contributions to growth and their population consequences Shelton, Andrew O., William H. Satterthwaite, Michael P. Beakes, Stephen B. Munch, Susan M. Sogard, and Marc Mangel American Naturalist 181(6):799-814
2013Shelton1
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Among-year variation in growth of Antarctic krill Euphausia superba based on length-frequency data

Shelton, Andrew Olaf, Douglas Kinzey, Christian Reiss, Stephan Munch, George Watters, and Marc Mangel
2013
Marine Ecology Progress Series 481:53-67
https://doi.org/10.3354/meps10245
Among-year variation in growth of Antarctic krill Euphausia superba based on length-frequency data Shelton, Andrew Olaf, Douglas Kinzey, Christian Reiss, Stephan Munch, George Watters, and Marc Mangel Marine Ecology Progress Series 481:53-67
2013Shelton2
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Choosing and using climate-change scenarios for ecological-impact assessments and conservation decisions

Snover, Amy K., Nathan J. Mantua, Jeremy S. Littell, Michael A. Alexander, Michelle M. McClure, and Janet Nye
2013
Conservation Biology 27(6):1147-1157
https://doi.org/10.1111/cobi.12163
Choosing and using climate-change scenarios for ecological-impact assessments and conservation decisions Snover, Amy K., Nathan J. Mantua, Jeremy S. Littell, Michael A. Alexander, Michelle M. McClure, and Janet Nye Conservation Biology 27(6):1147-1157
2013Snover
0
0
0
0
1
0
0
0

A validation of parentage-based tagging using hatchery steelhead in the Snake River basin

Steele, Craig A., Eric C. Anderson, Michael W. Ackerman, Maureen A. Hess, Nathan R. Campbell, Shawn R. Narum, and Matthew R. Campbell
2013
Canadian Journal of Fisheries and Aquatic Sciences 70(7):1046-1054
https://doi.org/10.1139/cjfas-2012-0451
A validation of parentage-based tagging using hatchery steelhead in the Snake River basin Steele, Craig A., Eric C. Anderson, Michael W. Ackerman, Maureen A. Hess, Nathan R. Campbell, Shawn R. Narum, and Matthew R. Campbell Canadian Journal of Fisheries and Aquatic Sciences 70(7):1046-1054
2013Steele
0
0
0
0
1
0
0
0

Behavioral ecology of jumbo squid (Dosidicus gigas) in relation to oxygen minimum zones

Stewart, Julia S., John C. Field, Unai Markaida, and William F. Gilly
2013
Deep Sea Research II 95:197-208
https://doi.org/10.1016/j.dsr2.2012.06.005
Behavioral ecology of jumbo squid (Dosidicus gigas) in relation to oxygen minimum zones Stewart, Julia S., John C. Field, Unai Markaida, and William F. Gilly Deep Sea Research II 95:197-208
2013StewartJ
0
0
0
0
1
0
0
0

Onshore–offshore movement of jumbo squid (Dosidicus gigas) on the continental shelf

Stewart, Julia S., William F. Gilly, John C. Field, and John C. Payne
2013
Deep Sea Research II 95:193-196
https://doi.org/10.1016/j.dsr2.2012.08.019
Onshore–offshore movement of jumbo squid (Dosidicus gigas) on the continental shelf Stewart, Julia S., William F. Gilly, John C. Field, and John C. Payne Deep Sea Research II 95:193-196
2013StewartJ2
0
0
0
0
1
0
0
0

A semiparametric Bayesian method for detecting Allee effects

Sugeno, Masatoshi, and Stephan B. Munch
2013
Ecology 94(5):1196-1204
https://doi.org/10.1890/12-0454.1
A semiparametric Bayesian method for detecting Allee effects Sugeno, Masatoshi, and Stephan B. Munch Ecology 94(5):1196-1204
2013Sugeno
0
0
0
0
1
0
0
0

A semiparametric Bayesian approach to estimating maximum reproductive rates at low population sizes

Sugeno, Masatoshi, and Stephan B. Munch
2013
Ecological Applications 23(4):699-709
https://doi.org/10.1890/12-0453.1
A semiparametric Bayesian approach to estimating maximum reproductive rates at low population sizes Sugeno, Masatoshi, and Stephan B. Munch Ecological Applications 23(4):699-709
2013Sugeno2
0
0
0
0
1
0
0
0

Appendix MS7: Commercial fishing economics technical report for the Secretarial Determination on whether to remove four dams on the Klamath River in California and Oregon

Thomson, Cynthia
2013
In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 902-958. U.S. NOAA National Marine Fisheries Service.
Appendix MS7: Commercial fishing economics technical report for the Secretarial Determination on whether to remove four dams on the Klamath River in California and Oregon Thomson, Cynthia In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 902-958. U.S. NOAA National Marine Fisheries Service.
2013Thomson
1
0
0
0
1
0
0
0

Genetic structure and different color morphotypes suggest the occurrence and bathymetric segregation of two incipient species of Sebastes off Argentina

Venerus, Leonardo A., Javier E. Ciancio, Carla Riva-Rossi, Elizabeth A. Gilbert-Horvath, Atila E. Gosztonyi, and John Carlos Garza
2013
Naturwissenschaften 100(7):645-658
https://doi.org/10.1007/s00114-013-1061-2
Genetic structure and different color morphotypes suggest the occurrence and bathymetric segregation of two incipient species of Sebastes off Argentina Venerus, Leonardo A., Javier E. Ciancio, Carla Riva-Rossi, Elizabeth A. Gilbert-Horvath, Atila E. Gosztonyi, and John Carlos Garza Naturwissenschaften 100(7):645-658
2013Venerus
0
0
0
0
1
0
0
0

Steelhead vulnerability to climate change in the Pacific Northwest

Wade, Alisa A., Timothy J. Beechie, Erica Fleishman, Nathan J. Mantua, Huan Wu, John S. Kimball, David M. Stoms, and Jack A. Stanford
2013
Journal of Applied Ecology 50(5):1093-1104
https://doi.org/10.1111/1365-2664.12137
Steelhead vulnerability to climate change in the Pacific Northwest Wade, Alisa A., Timothy J. Beechie, Erica Fleishman, Nathan J. Mantua, Huan Wu, John S. Kimball, David M. Stoms, and Jack A. Stanford Journal of Applied Ecology 50(5):1093-1104
2013Wade
0
0
0
0
1
0
0
0

Chinook and coho salmon

Wainwright, Thomas C., Thomas H. Williams, Kurt L. Fresh, and Brian K. Wells
2013
In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 244-294. U.S. NOAA National Marine Fisheries Service.
Chinook and coho salmon Wainwright, Thomas C., Thomas H. Williams, Kurt L. Fresh, and Brian K. Wells In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 244-294. U.S. NOAA National Marine Fisheries Service.
2013Wainwright
1
0
0
0
1
0
0
0

Data to support a review of Essential Fish Habitat for Pacific Coast groundfish [abstract]

Wakefield, W. Waldo, Mary M. Yoklavich, Chris G. Romsos, Joseph J. Bizzarro, Curt E. Whitmire, and Marlene Bellman
2013
In: George W. Boehlert et al. (eds.), Oregon Marine Renewable Energy Environmental Science Conference proceedings, p. 119-120. U.S. Department of the Interior, Bureau of Ocean Energy Management, Pacific Region, OCS Study BOEM 2013-0113.
Data to support a review of Essential Fish Habitat for Pacific Coast groundfish [abstract] Wakefield, W. Waldo, Mary M. Yoklavich, Chris G. Romsos, Joseph J. Bizzarro, Curt E. Whitmire, and Marlene Bellman In: George W. Boehlert et al. (eds.), Oregon Marine Renewable Energy Environmental Science Conference proceedings, p. 119-120. U.S. Department of the Interior, Bureau of Ocean Energy Management, Pacific Region, OCS Study BOEM 2013-0113.
2013Wakefield
1
0
0
0
1
0
0
0

Sacramento fall run chinook salmon abundance

Wells, Brian
2013
In: Tamara Kadir, Linda Mazur, Carmen Milanes, and Karen Randles (eds.), Indicators of climate change in California, p. 198-201. California Environmental Protection Agency, Office of Environmental Health Hazard Assessment.
Sacramento fall run chinook salmon abundance Wells, Brian In: Tamara Kadir, Linda Mazur, Carmen Milanes, and Karen Randles (eds.), Indicators of climate change in California, p. 198-201. California Environmental Protection Agency, Office of Environmental Health Hazard Assessment.
2013Wells3
1
0
0
0
1
0
0
0

State of the California Current 2012-13: No such thing as an "average" year

Wells, Brian K., Isaac D. Schroeder, Jarrod A. Santora, Elliott L. Hazen, Steven J. Bograd, Eric P. Bjorkstedt, Valerie J. Loeb, Sam McClatchie, Edward D. Weber, William Watson, Andrew R. Thompson, William T. Peterson, Richard D. Brodeur, Jeff Harding, John Field, Keith Sakuma, Sean Hayes, Nathan Mantua, William J. Sydeman, Marcel Losekoot, Sarah Ann Thompson, John Largier, Sung Yong Kim, Francisco P. Chavez, Caren Barcelo, Pete Warzybok, Russel Bradley, Jaime Jahncke, Ralf Goericke, Gregory S. Campbell, John A. Hildebrand, Sharon R. Melin, Robert L. DeLong, Jose Gomez-Valdes, Bertha Lavaniegos, Gilberto Gaxiola-Castro, Richard T. Golightly, Stephanie R. Schneider, Nancy Lo, Robert M. Suryan, Amanda J. Gladics, Cheryl A. Horton, Jennifer Fisher, Cheryl Morgan, Jay Peterson, Elizabeth A. Daly, Toby D. Auth, and Jeffrey Abell
2013
CalCOFI Reports 54:37-71
State of the California Current 2012-13: No such thing as an "average" year Wells, Brian K., Isaac D. Schroeder, Jarrod A. Santora, Elliott L. Hazen, Steven J. Bograd, Eric P. Bjorkstedt, Valerie J. Loeb, Sam McClatchie, Edward D. Weber, William Watson, Andrew R. Thompson, William T. Peterson, Richard D. Brodeur, Jeff Harding, John Field, Keith Sakuma, Sean Hayes, Nathan Mantua, William J. Sydeman, Marcel Losekoot, Sarah Ann Thompson, John Largier, Sung Yong Kim, Francisco P. Chavez, Caren Barcelo, Pete Warzybok, Russel Bradley, Jaime Jahncke, Ralf Goericke, Gregory S. Campbell, John A. Hildebrand, Sharon R. Melin, Robert L. DeLong, Jose Gomez-Valdes, Bertha Lavaniegos, Gilberto Gaxiola-Castro, Richard T. Golightly, Stephanie R. Schneider, Nancy Lo, Robert M. Suryan, Amanda J. Gladics, Cheryl A. Horton, Jennifer Fisher, Cheryl Morgan, Jay Peterson, Elizabeth A. Daly, Toby D. Auth, and Jeffrey Abell CalCOFI Reports 54:37-71
2013Wells2
1
0
1
0
1
1
0
0

Upper Klamath and Trinity River Chinook salmon Biological Review Team report

Williams, Thomas H., John Carlos Garza, Nicholas J. Hetrick, Steven T. Lindley, Michael S. Mohr, James M. Myers, Michael R. O'Farrell, Rebecca M. Quinones, and David J. Teel
2013
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-502. 47 p.
Upper Klamath and Trinity River Chinook salmon Biological Review Team report Williams, Thomas H., John Carlos Garza, Nicholas J. Hetrick, Steven T. Lindley, Michael S. Mohr, James M. Myers, Michael R. O'Farrell, Rebecca M. Quinones, and David J. Teel U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-502. 47 p.
2013Williams
1
0
0
0
1
0
0
0

Management strategy evaluation applied to the conservation of an endangered population subject to incidental take

Winship, Arliss J., Michael R. O'Farrell, and Michael S. Mohr
2013
Biological Conservation 158:155-166
Management strategy evaluation applied to the conservation of an endangered population subject to incidental take Winship, Arliss J., Michael R. O'Farrell, and Michael S. Mohr Biological Conservation 158:155-166
2013Winship
0
0
0
0
1
0
0
0

Water and otolith chemistry identify exposure of juvenile rockfish to upwelled waters in an open coastal system

Woodson, Lindsay E., Brian K. Wells, Churchill B. Grimes, Robert P. Franks, Jarrod A. Santora, and Mark H. Carr
2013
Marine Ecology Progress Series 473:261-273
https://doi.org/10.3354/meps10063
Water and otolith chemistry identify exposure of juvenile rockfish to upwelled waters in an open coastal system Woodson, Lindsay E., Brian K. Wells, Churchill B. Grimes, Robert P. Franks, Jarrod A. Santora, and Mark H. Carr Marine Ecology Progress Series 473:261-273
2013Woodson
0
0
0
0
1
0
0
0

Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytscha during early ocean residence

Woodson, Lindsay E., Brian K. Wells, Peter K. Weber, R. Bruce MacFarlane, George E. Whitman, and Rachel C. Johnson
2013
Marine Ecology Progress Series 487:163-175
https://doi.org/10.3354/meps10353
Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytscha during early ocean residence Woodson, Lindsay E., Brian K. Wells, Peter K. Weber, R. Bruce MacFarlane, George E. Whitman, and Rachel C. Johnson Marine Ecology Progress Series 487:163-175
2013Woodson2
0
0
0
0
1
0
0
0

A characterization of the Christmas tree black coral (Antipathes dendrochristos) community on three seamounts in the Southern California Bight from a survey using a manned submersible

Yoklavich, Mary, Tom Laidig, Andrew Taylor, Diana Watters, Lisa Krigsman, and Milton Love
2013
Report to NOAA Deep-Sea Coral Research and Technology Program, Silver Spring, Maryland. 82 p.
A characterization of the Christmas tree black coral (Antipathes dendrochristos) community on three seamounts in the Southern California Bight from a survey using a manned submersible Yoklavich, Mary, Tom Laidig, Andrew Taylor, Diana Watters, Lisa Krigsman, and Milton Love Report to NOAA Deep-Sea Coral Research and Technology Program, Silver Spring, Maryland. 82 p.
2013Yoklavich2
1
0
0
0
1
0
0
0

Understanding the capabilities of new technologies and methods to survey west coast groundfishes: Results from a visual survey conducted in 2011 using the Dual Deepworker manned submersible at Footprint and Piggy banks off Southern California

Yoklavich, Mary, Tom Laidig, Diana Watters, and Milton Love
2013
[Final report to NMFS Science Advisor for Stock Assessments.] U.S. National Marine Fisheries Service, Santa Cruz, California. 28 p.
Understanding the capabilities of new technologies and methods to survey west coast groundfishes: Results from a visual survey conducted in 2011 using the Dual Deepworker manned submersible at Footprint and Piggy banks off Southern California Yoklavich, Mary, Tom Laidig, Diana Watters, and Milton Love [Final report to NMFS Science Advisor for Stock Assessments.] U.S. National Marine Fisheries Service, Santa Cruz, California. 28 p.
2013Yoklavich
1
0
0
0
1
0
0
0

A comparison of intertidal species richness and composition between Central California and Oahu, Hawaii

Zabin, Chela J., Eric M. Danner, Erin P. Baumgartner, David Spafford, Kathy Ann Miller, and John S. Pearse
2013
Marine Ecology 34(2):131-156
https://doi.org/10.1111/maec.12007
A comparison of intertidal species richness and composition between Central California and Oahu, Hawaii Zabin, Chela J., Eric M. Danner, Erin P. Baumgartner, David Spafford, Kathy Ann Miller, and John S. Pearse Marine Ecology 34(2):131-156
2013Zabin
0
0
0
0
1
0
0
0

A new version of PRT software for sibling groups reconstruction with comments regarding several issues in the sibling reconstruction problem

Almudevar, Anthony, and Eric C. Anderson
2012
Molecular Ecology Resources 12(1):164-178
https://doi.org/10.1111/j.1755-0998.2011.03061.x
A new version of PRT software for sibling groups reconstruction with comments regarding several issues in the sibling reconstruction problem Almudevar, Anthony, and Eric C. Anderson Molecular Ecology Resources 12(1):164-178
2012Almudevar
0
0
0
0
1
0
0
0

Large-scale parentage inference with SNPs: an efficient algorithm for statistical confidence of parent pair allocations

Anderson, Eric C.
2012
Statistical Applications in Genetics and Molecular Biology 11(5):12 (26 p.)
https://doi.org/10.1515/1544-6115.1833
Large-scale parentage inference with SNPs: an efficient algorithm for statistical confidence of parent pair allocations Anderson, Eric C. Statistical Applications in Genetics and Molecular Biology 11(5):12 (26 p.)
2012Anderson
0
0
0
0
1
0
0
0

Road surface erosion on the Jackson Demonstration State Forest: results of a pilot study

Barrett, Brian, Rosemary Kosaka, and David Tomberlin
2012
In: Proceedings of the Coast Redwood Forests in a Changing California: a symposium for scientists and managers, p. 13-21. U.S. Forest Service, Pacific Southwest Research Station, General Technical Report PSW-GTR-238.
Road surface erosion on the Jackson Demonstration State Forest: results of a pilot study Barrett, Brian, Rosemary Kosaka, and David Tomberlin In: Proceedings of the Coast Redwood Forests in a Changing California: a symposium for scientists and managers, p. 13-21. U.S. Forest Service, Pacific Southwest Research Station, General Technical Report PSW-GTR-238.
2012Barrett
1
0
0
0
1
0
0
0

Ricker model

Bjorkstedt, Eric P.
2012
In: Alan Hastings and Louis J. Gross (eds.), Encyclopedia of theoretical ecology, p. 632-636. University of California Press.
Ricker model Bjorkstedt, Eric P. In: Alan Hastings and Louis J. Gross (eds.), Encyclopedia of theoretical ecology, p. 632-636. University of California Press.
2012Bjorkstedt
0
0
0
0
1
0
0
0

State of the California Current 2011-2012: Ecosystems respond to local forcing as La Nina wavers and wanes

Bjorkstedt, Eric P., Ralf Goericke, Sam McClatchie, Ed Weber, William Watson, Nancy Lo, William T. Peterson, Richard D. Brodeur, Toby Auth, Jennifer Fisher, Cheryl Morgan, Jay Peterson, John Largier, Steven J. Bograd, Reginaldo Durazo, Gilberto Gaxiola-Castro, Bertha Lavaniegos, Francisco P. Chavez, Curtis A. Collins, Bob Hannah, John Field, Keith Sakuma, Will Satterthwaite, Michael O'Farrell, Sean Hayes, Jeff Harding, William J. Sydeman, Sarah Ann Thompson, Pete Warzybok, Russell Bradley, Jaime Jahncke, Richard T. Golightly, Stephanie R. Schneider, Robert M. Suryan, Amanda J. Gladics, Cheryl A. Horton, Sung Yong Kim, Sharon R. Melin, Robert L. DeLong, and Jeffrey Abell
2012
CalCOFI Reports 53:41-76
State of the California Current 2011-2012: Ecosystems respond to local forcing as La Nina wavers and wanes Bjorkstedt, Eric P., Ralf Goericke, Sam McClatchie, Ed Weber, William Watson, Nancy Lo, William T. Peterson, Richard D. Brodeur, Toby Auth, Jennifer Fisher, Cheryl Morgan, Jay Peterson, John Largier, Steven J. Bograd, Reginaldo Durazo, Gilberto Gaxiola-Castro, Bertha Lavaniegos, Francisco P. Chavez, Curtis A. Collins, Bob Hannah, John Field, Keith Sakuma, Will Satterthwaite, Michael O'Farrell, Sean Hayes, Jeff Harding, William J. Sydeman, Sarah Ann Thompson, Pete Warzybok, Russell Bradley, Jaime Jahncke, Richard T. Golightly, Stephanie R. Schneider, Robert M. Suryan, Amanda J. Gladics, Cheryl A. Horton, Sung Yong Kim, Sharon R. Melin, Robert L. DeLong, and Jeffrey Abell CalCOFI Reports 53:41-76
2012Bjorkstedt2
1
0
1
0
1
1
0
0

Regional habitat assessment prioritization for California stocks

Blackhart, Kristan, Stephen K. Brown, Bryant Chesney, E.J. Dick, Kirsten Larsen, Michael O'Farrell, Korie Schaeffer, Brian Spence, Kevin Stierhoff, Dale Sweetnam, and Mary Yoklavich
2012
Report of the Southwest Regional Habitat Assessment Prioritization Working Group. U.S. NOAA National Marine Fisheries Service. 36 p.
Regional habitat assessment prioritization for California stocks Blackhart, Kristan, Stephen K. Brown, Bryant Chesney, E.J. Dick, Kirsten Larsen, Michael O'Farrell, Korie Schaeffer, Brian Spence, Kevin Stierhoff, Dale Sweetnam, and Mary Yoklavich Report of the Southwest Regional Habitat Assessment Prioritization Working Group. U.S. NOAA National Marine Fisheries Service. 36 p.
2012Blackhart
1
0
0
0
1
1
0
0

Identifying distinct thermal components of a creek

Boughton, David A., Christine Hatch, and Ethan Mora
2012
Water Resources Research 48: W09506 (13 p.)
https://doi.org/10.1029/2011WR011713
Identifying distinct thermal components of a creek Boughton, David A., Christine Hatch, and Ethan Mora Water Resources Research 48: W09506 (13 p.)
2012Boughton
0
0
0
0
1
0
0
0

A guide to the rockfishes, thornyheads, and scorpionfishes of the northeast Pacific

Butler, John L., Milton S. Love, and Tom E. Laidig
2012
University of California Press. 185 p.
A guide to the rockfishes, thornyheads, and scorpionfishes of the northeast Pacific Butler, John L., Milton S. Love, and Tom E. Laidig University of California Press. 185 p.
2012Butler
0
0
0
0
1
1
0
0

California Hatchery Review Report

California Hatchery Scientific Review Group
2012
Prepared for the U.S. Fish and Wildlife Service and Pacific States Marine Fisheries Commission. 102 p. Appendices available at http://cahatcheryreview.com/reports/
California Hatchery Review Report California Hatchery Scientific Review Group Prepared for the U.S. Fish and Wildlife Service and Pacific States Marine Fisheries Commission. 102 p. Appendices available at http://cahatcheryreview.com/reports/
2012California
1
0
0
0
1
0
0
0

Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cutthroat trout and genetic identification of related taxa

Campbell, N.R., S.J. Amish, V.L. Pritchard, K.S. McKelvey, M.K. Young, M.K. Schwartz, J.C. Garza, G. Luikart, and S.R. Narum
2012
Molecular Ecology Resources 12(5):942-949
https://doi.org/10.1111/j.1755-0998.2012.03161.x
Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cutthroat trout and genetic identification of related taxa Campbell, N.R., S.J. Amish, V.L. Pritchard, K.S. McKelvey, M.K. Young, M.K. Schwartz, J.C. Garza, G. Luikart, and S.R. Narum Molecular Ecology Resources 12(5):942-949
2012Campbell
0
0
0
0
1
0
0
0

Coalescent and biophysical models of stepping-stone gene flow in neritid snails

Crandall, Eric D., Eric A. Treml, and Paul H. Barber
2012
Molecular Ecology 21(22):5579-5598
https://doi.org/10.1111/mec.12031
Coalescent and biophysical models of stepping-stone gene flow in neritid snails Crandall, Eric D., Eric A. Treml, and Paul H. Barber Molecular Ecology 21(22):5579-5598
2012Crandall
0
0
0
0
1
0
0
0

River temperature forecasting: a coupled-modeling framework for management of river habitat

Danner, Eric M., Forrest S. Melton, Andrew Pike, Hirofumi Hashimoto, Andrew Michaelis, Balaji Rajagopalan, Jason Caldwell, Lynn DeWitt, Steven Lindley, and Ramakrishna R. Nemani
2012
IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing 5(6):1752-1760
https://doi.org/10.1109/JSTARS.2012.2229968
River temperature forecasting: a coupled-modeling framework for management of river habitat Danner, Eric M., Forrest S. Melton, Andrew Pike, Hirofumi Hashimoto, Andrew Michaelis, Balaji Rajagopalan, Jason Caldwell, Lynn DeWitt, Steven Lindley, and Ramakrishna R. Nemani IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing 5(6):1752-1760
2012Danner
0
0
1
0
1
0
1
0

Exploration of Bayesian stock reduction analysis for assessment of West Coast groundfish

Dick, E.J., Alec MacCall, Braden Soper, and Maria DeYorio
2012
Report submitted to the Review Panel Meeting on Assessment Methods for Data-Moderate Stocks (26-29 June 2012, Seattle, Washington). Pacific Fishery Management Council, Portland, Oregon. 27 p.
Exploration of Bayesian stock reduction analysis for assessment of West Coast groundfish Dick, E.J., Alec MacCall, Braden Soper, and Maria DeYorio Report submitted to the Review Panel Meeting on Assessment Methods for Data-Moderate Stocks (26-29 June 2012, Seattle, Washington). Pacific Fishery Management Council, Portland, Oregon. 27 p.
2012Dick
1
0
0
0
1
0
0
0

Assessing avian predation on juvenile salmonids using passive integrated transponder tag recoveries and mark-recapture methods

Frechette, Danielle, Anne-Marie K. Osterback, Sean A. Hayes, Morgan H. Bond, Jonathan W. Moore, Scott A. Shaffer, and James T. Harvey
2012
North American Journal of Fisheries Management 32(6):1237-1250
https://doi.org/10.1080/02755947.2012.728171
Assessing avian predation on juvenile salmonids using passive integrated transponder tag recoveries and mark-recapture methods Frechette, Danielle, Anne-Marie K. Osterback, Sean A. Hayes, Morgan H. Bond, Jonathan W. Moore, Scott A. Shaffer, and James T. Harvey North American Journal of Fisheries Management 32(6):1237-1250
2012Frechette
0
0
0
0
1
0
0
0

Conservation status of eulachon in the California Current

Gustafson, Richard G., Michael J. Ford, Peter B. Adams, Jonathan S. Drake, Robert L. Emmett, Kurt L. Fresh, Mindy Rowse, Elizabeth A.K. Spangler, Robert E. Spangler, David J. Teel, and Matthew T. Wilson
2012
Fish and Fisheries 13(2):121-138
https://doi.org/10.1111/j.1467-2979.2011.00418.x
Conservation status of eulachon in the California Current Gustafson, Richard G., Michael J. Ford, Peter B. Adams, Jonathan S. Drake, Robert L. Emmett, Kurt L. Fresh, Mindy Rowse, Elizabeth A.K. Spangler, Robert E. Spangler, David J. Teel, and Matthew T. Wilson Fish and Fisheries 13(2):121-138
2012Gustafson
0
0
0
0
1
0
0
0

Should I stay or should I go? The influence of genetic origin on emigration behavior and physiology of resident and anadromous juvenile Oncorhynchus mykiss

Hayes, Sean A., Chad V. Hanson, Devon E. Pearse, Morgan H. Bond, John Carlos Garza, and R. Bruce MacFarlane
2012
North American Journal of Fisheries Management 32(4):772-780
https://doi.org/10.1080/02755947.2012.686953
Should I stay or should I go? The influence of genetic origin on emigration behavior and physiology of resident and anadromous juvenile Oncorhynchus mykiss Hayes, Sean A., Chad V. Hanson, Devon E. Pearse, Morgan H. Bond, John Carlos Garza, and R. Bruce MacFarlane North American Journal of Fisheries Management 32(4):772-780
2012Hayes2
0
0
0
0
1
0
0
0

Using archival tags to infer habitat use of Central California steelhead and coho salmon

Hayes, Sean A., Morgan H. Bond, Brian K. Wells, Chad V. Hanson, Andrew W. Jones, R. Bruce MacFarlane
2012
In: Advances in fish tagging and marking technology. American Fisheries Society Symposium 76:471-492.
Using archival tags to infer habitat use of Central California steelhead and coho salmon Hayes, Sean A., Morgan H. Bond, Brian K. Wells, Chad V. Hanson, Andrew W. Jones, R. Bruce MacFarlane In: Advances in fish tagging and marking technology. American Fisheries Society Symposium 76:471-492.
2012Hayes
1
0
0
0
1
0
0
0

NMFS Southwest Fisheries Science Center: Agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee

He, Xi, and John Field (eds.), E.J. Dick, John Hyde, Janet Mason, Andrew Thompson, Cindy Thomson, and Mary Yoklavich
2012
In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 53rd annual meeting of the TSC (May 1-2, 2012, Newport Beach, California), p. 249-268. Pacific States Marine Fisheries Commission.
NMFS Southwest Fisheries Science Center: Agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee He, Xi, and John Field (eds.), E.J. Dick, John Hyde, Janet Mason, Andrew Thompson, Cindy Thomson, and Mary Yoklavich In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 53rd annual meeting of the TSC (May 1-2, 2012, Newport Beach, California), p. 249-268. Pacific States Marine Fisheries Commission.
2012He
1
0
1
0
1
1
0
0

Green sturgeon distribution in the Pacific Ocean estimated from modeled oceanographic features and migration behavior

Huff, David D., Steven T. Lindley, Brian K. Wells, and Fei Chai
2012
PLoS ONE 7(9):e45852 (12 p.)
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Johnson, Rachel C., Peter K. Weber, John D. Wikert, Michelle L. Workman, R. Bruce MacFarlane, Marty J. Grove, and Alex K. Schmitt
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PLoS ONE 7(2):e28880 (11 p.)
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Kiernan, Joseph D., and Peter B. Moyle
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Ecological Applications 22(4):1146-1161
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Ecological Applications 22(5):1472-1482
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Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2012 season

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Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2011 run

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Models and maps: predicting the distribution of corals and other benthic macro-invertebrates in shelf habitats

Krigsman, Lisa M., Mary M. Yoklavich, E.J. Dick, and Guy R. Cochrane
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Ecosphere 3(1):art3 (16 p.)
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Dealing with uncertainty in ecosystem models: The paradox of use for living marine resource management

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Empirical standard mass equation for Salmo marmoratus

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Journal of Fish Biology 81(6):2086-2091
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Data-limited management reference points to avoid collapse of stocks dependent on learned migration behaviour

MacCall, Alec D.
2012
ICES Journal of Marine Science 69(2):267-270
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A data-poor assessment of the US wreckfish fishery

MacCall, Alec D.
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Weak evidence for sardine collapse

MacCall, Alec D., Kevin T. Hill, Paul Crone, and Robert Emmett
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Proceedings of the National Academy of Sciences of the United States of America 109(19):E1131
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Sources of abundance information for 65 unassessed stocks of West Coast groundfish

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Effort changes around a marine reserve: The case of the California Rockfish Conservation Area

Mason, Janet, Rosemary Kosaka, Aaron Mamula, and Cameron Speir
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Onset of melanophore patterns in the head region of Chinook salmon: a natural marker for the reidentification of individual fish

Merz, Joseph E., Paul Skvorc, Susan M. Sogard, Clark Watry, Scott M. Blankenship, and Erwin E. Van Nieuwenhuyse
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Moore, Jonathan W., Stephanie M. Carlson, Laura A. Twardochleb, Jason L. Hwan, Justin M. Fox, and Sean A. Hayes
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Sacramento River winter Chinook cohort reconstruction: analysis of ocean fishery impacts

O'Farrell, Michael R., Michael S. Mohr, Allen M. Grover, and William H. Satterthwaite
2012
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-491. 68 p.
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The Winter-Run Harvest Model (WRHM)

O'Farrell, Michael R., Shanae D. Allen, and Michael S. Mohr
2012
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-489. 17 p.
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