NOAA FISHERIES

Changes in size composition and relative abundance of fishes in central California after a decade of spatial fishing closures Marks, Corina I., Ryan T. Fields, Richard M. Starr, Deb Wilson-Vandenberg, John C. Field, Rebecca R. Miller, Sabrina G. Beyer, Susan M. Sogard, and Dan Howard CalCOFI Reports 56:119-132

Sport science for salmon and other species: ecological consequences of metabolic power constraints Martin, B.T., R.M. Nisbet, A. Pike, C.J. Michel, and E.M. Danner Ecology Letters 18(6):535-544

Chinook salmon outmigration survival in wet and dry years in California's Sacramento River Michel, Cyril J., Arnold J. Ammann, Steven T. Lindley, Philip T. Sandstrom, Eric D. Chapman, Michael J. Thomas, Gabriel P. Singer, A. Peter Klimley, and R. Bruce MacFarlane Canadian Journal of Fisheries and Aquatic Sciences 72(11):1749-1759

Estimating the riverine abundance of green sturgeon using a dual-frequency identification sonar Mora, E.A., S.T. Lindley, D.L. Erickson, and A.P. Klimley North American Journal of Fisheries Management 35(3):557-566

California Current Integrated Ecosystem Assessment (CCIEA): State of the California Current report, 2015 NOAA California Current Integrated Ecosystem Assessment Team A report of the CCIEA Team (NOAA Northwest, Southwest and Alaska Fisheries Science Centers) to the Pacific Fishery Management Council, March 8, 2015. NOAA National Marine Fisheries Service. 45 p.

Inferred historical fishing mortality rates for an endangered population of Chinook salmon (Oncorhynchus tshawytscha) O'Farrell, Michael R., and William H. Satterthwaite Fishery Bulletin (U.S.) 113(3):341-351

An evaluation of the proposed increases in spatial stratification for California salmon fisheries O'Farrell, Michael, Melodie Palmer-Zwahlen, Jennifer Simon, and Brett Kormos In: November 2015 Briefing Book, Agenda Item D.2, Attachment 4 (23 p.). Pacific Fishery Management Council, Portland, Oregon.

California coastal Chinook salmon fishery management: future prospects O'Farrell, Michael, Shanae Allen-Moran, Kristine Atkinson, Peter Dygert, Sean Gallagher, Allen Grover, Brett Kormos, Michael Lacy, Eric Larson, Michael Mohr, Seth Ricker, William Satterthwaite, and Brian Spence U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-542. 16 p.

Long-term shifts in anthropogenic subsidies to gulls and implications for an imperiled fish Osterback, Ann-Marie K., Danielle M. Frechette, Sean A. Hayes, Scott A. Shaffer, and Jonathan W. Moore Biological Conservation 191:606-613

Review of 2014 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 340 p.

Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2015 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 134 p.

Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2015 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 66 p.

Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2015 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 42 p.

Migration and habitat use of green sturgeon (Acipenser medirostris) near the Umpqua River estuary: Final report, project to assess potential impacts of the Reedsport Ocean Power Technologies wave energy generation facility on migration and habitat use of green sturgeon (Acipenser medirostris) Payne, John, Daniel L. Erickson, Michael Donnellan, and Steven T. Lindley Prepared for the Oregon Wave Energy Trust, Portland, Oregon. 64 p.

You can't unscramble an egg: Population genetic structure of Oncorhynchus mykiss in the California Central Valley inferred from combined microsatellite and single nucleotide polymorphism data Pearse, Devon E., and John Carlos Garza San Francisco Estuary and Watershed Science 13(4):3 (17 p.)

Developing age determination criteria for bocaccio (Sebastes paucispinus) Pearson, Donald E., Lyndsey S. Lefebvre, and Xi He U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-541. 24 p.

On estimating the reliability of ecological forecasts Perretti, Charles T., and Stephan B. Munch Journal of Theoretical Biology 372:211-216

SNPs reveal previously undocumented non-native introgression within threatened trout populations Pritchard, Victoria L., John Carlos Garza, and Mary M. Peacock Conservation Genetics 16(4):1001-1006

Pacific mackerel Stock Assessment Review (STAR) Panel meeting report Punt, Andre, Will Satterthwaite, Vivian Haist, and David Checkley Pacific Fishery Management Council, Portland, Oregon. 26 p.

Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California Quinones, Rebecca M., Theodore E. Grantham, Brett N. Harvey, Joseph D. Kiernan, Mick Klasson, Alpa P. Wintzer, and Peter B. Moyle Reviews in Fish Biology and Fisheries 25(1):195-215

Long-term variation in a central California pelagic forage assemblage Ralston, Stephen, John C. Field, and Keith M. Sakuma Journal of Marine Systems 146:26-37

A regression-based approach for cool-season storm surge predictions along the New York–New Jersey coast Roberts, Keith J., Brian A. Colle, Nickitas Georgas, and Stephan B. Munch Journal of Applied Meteorology and Climatology 54(8):1773-1791

Demonstration of a fully-coupled end-to-end model for small pelagic fish using sardine and anchovy in the California Current Rose, Kenneth A., Jerome Fiechter, Enrique N. Curchitser, Kate Hedstrom, Miguel Bernal, Sean Creekmore, Alan Haynie, Shin-ichi Ito, Salvador Lluch-Cota, Bernard A. Megrey, Chris A. Edwards, Dave Checkley, Tony Koslow, Sam McClatchie, Francisco Werner, Alec MacCall, and Vera Agostini Progress in Oceanography 138(pt.B):348-380

End-to-end modeling of sardine and anchovy in the California Current system Rose, Kenneth A., Sean Creekmore, Jerome Fiechter, Enrique N. Curchitser, Kate Hedstrom, Miguel Bernal, Alan Haynie, Bernard A. Megrey, Shin-Ichi Ito, Salvador Lluch-Cota, Chris A. Edwards, Dave Checkley, Tony Koslow, Sam McClatchie, Francisco Werner, Alec McCall, and Vera Agostini CalCOFI Reports 56:78-79

Cruise report, Ocean Starr OS-15-05, April 30 - June 14, 2015: Rockfish recruitment and ecosystem assessment Sakuma, Keith National Marine Fisheries Service, Santa Cruz, California. 18 p.

Where should I send it? Optimizing the submission decision process Salinas, Santiago, and Stephan B. Munch PLoS ONE 10(1):e0115451 (11 p.)

Weakening portfolio effect strength in a hatchery-supplemented Chinook salmon population complex Satterthwaite, William H., and Stephanie M. Carlson Canadian Journal of Fisheries and Aquatic Sciences 72(12):1860-1875

Stock composition and ocean spatial distribution inference from California recreational Chinook salmon fisheries using genetic stock identification Satterthwaite, William H., Javier Ciancio, Eric Crandall, Melodie L. Palmer-Zwahlen, Allen M. Grover, Michael R. O'Farrell, Eric C. Anderson, Michael S. Mohr, and John Carlos Garza Fisheries Research 170:166-178

Multidisciplinary evaluation of the feasibility of parentage-based genetic tagging (PBT) for management of Pacific salmon Satterthwaite, William, Eric Anderson, Matthew Campbell, John Carlos Garza, Michael Mohr, Shawn Narum, and Cameron Speir Report to the Pacific Salmon Commission. 135 p.

Effects of water supply on labor demand and agricultural production in California's San Joaquin Valley Speir, Cameron, Aaron Mamula, and Daniel Ladd Water Economics and Policy 1(2):1550003 (27 p.)

Uncertainty, irreversibility and the optimal timing of large-scale investments in protected species habitat restoration Speir, Cameron, Sam Pittman, and David Tomberlin Frontiers in Marine Science 2:101 (11 p.)

Quantifying physiological influences on otolith microchemistry Sturrock, Anna M., Ewan Hunter, J. Andrew Milton, EIMF, Rachel C. Johnson, Colin P. Waring, and Clive N. Trueman Methods in Ecology and Evolution 6(7):806-816

Reconstructing the migratory behavior and long-term survivorship of juvenile Chinook salmon under contrasting hydrologic regimes Sturrock, Anna M., J.D. Wikert, Timothy Heyne, Carl Mesick, Alan E. Hubbard, Travis M. Hinkelman, Peter K. Weber, George E. Whitman, Justin J. Glessner, and Rachel C. Johnson PLoS ONE 10(5):e0122380 (23 p.)

California's commercial fisheries: 1981-2012 Thomson, Cynthia J. Marine Fisheries Review 77(3):48-72

Spatial delay-difference models for estimating spatiotemporal variation in juvenile production and population abundance Thorson, James T., James N. Ianelli, Stephan B. Munch, Kotaro Ono, and Paul D. Spencer Canadian Journal of Fisheries and Aquatic Sciences 72(12):1897-1915

Measuring changes in multi-factor productivity in U.S. catch share fisheries Thunberg, Eric, John Walden, Juan Agar, Ron Felthoven, Abigail Harley, Stephen Kasperski, Jean Lee, Todd Lee, Aaron Mamula, Jessica Stephen, and Andy Strelcheck Marine Policy 62:294-301

Critically endangered totoaba Totoaba macdonaldi: signs of recovery and potential threats after a population collapse Valenzuela-Quinonez, Fausto, Francisco Arreguin-Sanchez, Silvia Salas-Marquez, Francisco J. Garcia-De Leon, John C. Garza, Martha J. Roman-Rodriguez, and Juan A. De-Anda-Montanez Endangered Species Research 29(1):1-11

Predator-induced phenotypic plasticity within- and across-generations: a challenge for theory? Walsh, Matthew R., Frank Cooley IV, Kelsey Biles, and Stephan B. Munch Proceedings of the Royal Society B 282(1798):20142205 (9 p.)

When is a species at risk in 'all or a significant portion of its range'? Waples, Robin S., Peter B. Adams, James A. Bohnsack, and Barbara L. Taylor Endangered Species Research 27(2):189-192

Habitat-based predictive mapping of rockfish density and biomass off the central California coast Wedding, Lisa, and Mary M. Yoklavich Marine Ecology Progress Series 540:235-250

Expected future performance of salmon abundance forecast models with varying complexity Winship, Arliss J., Michael R. O'Farrell, William H. Satterthwaite, Brian K. Wells, and Michael S. Mohr Canadian Journal of Fisheries and Aquatic Sciences 72(4):557-569

Pacific Coast Region Yoklavich, Mary, and Waldo Wakefield In: Our living oceans: habitat: Status of the habitat of U.S. living marine resources, p. 189-221. NOAA Technical Memorandum NMFS-F/SPO-75.

A comparative assessment of underwater visual survey tools: Results of a workshop and user questionnaire Yoklavich, Mary, Jennifer Reynolds, and Dirk Rosen U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-547. 44 p.

Comment on 'Bayesian parentage analysis with systematic accountability of genotyping error, missing data and false matching' Anderson, Eric C., and Thomas C. Ng Bioinformatics 30(5):743-745

Next-generation sequencing for molecular ecology: a caveat regarding pooled samples Anderson, Eric C., Hans J. Skaug, and Daniel J. Barshis Molecular Ecology 23(3):502-512

Atlantis model for the California Current: Report of Methodology Review Panel meeting Aydin, Kerim, Kenneth Frank, Martin Dorn, Daniel Howell, Galen Johnson, Pete Lawson, Andre Punt, Will Satterthwaite, Tien-Shui Tsou, Cindy Thomson, and Reg Watson November 2014 Briefing Book, agenda item H.1.a, attachment 1. Pacific Fishery Management Council, Portland, Oregon. 33 p.

Advancing biodiversity research in developing countries: the need for changing paradigms Barber, Paul H., Ma. Carmen A. Ablan-Lagman, Ambariyanto, Roberto G.S. Berlinck, Dita Cahyani, Eric D. Crandall, Rachel Ravago-Gotanco, Marie Antonette Juinio-Menez, I.G. Ngurah Mahardika, Kartik Shanker, Craig J. Starger, Abdul Hamid A. Toha, Aji W. Anggoro, and Demian A. Willette Bulletin of Marine Science 90(1):187-210

Evaluating statistical approaches to quantifying juvenile Chinook salmon habitat in a regulated California river Beakes, M.P., J.W. Moore, N. Retford, R. Brown, J.E. Merz, and S.M. Sogard River Research and Applications 30(2):180-191

Using scale characteristics and water temperature to reconstruct growth rates of juvenile steelhead Oncorhynchus mykiss Beakes, M.P., S. Sharron, R. Charish, J.W. Moore, W.H. Satterthwaite, E. Sturm, B.K. Wells, S.M. Sogard, and M. Mangel Journal of Fish Biology 84(1):58-72

Wildfire and the effects of shifting stream temperature on salmonids Beakes, Michael P., Jonathan W. Moore, Sean A. Hayes, and Susan M. Sogard Ecosphere 5(5):art63 (14 p.)

Evolving coral reef conservation with genetic information Beger, Maria, Kimberly A. Selkoe, Eric Treml, Paul H. Barber, Sophie von der Heyden, Eric D. Crandall, Robert J. Toonen, and Cynthia Riginos Bulletin of Marine Science 90(1):159-185

Fisheries release mortality: identifying, prioritizing, and resolving data gaps Benaka, L.R., L. Sharpe, L. Anderson, K. Brennan, J.E. Budrick, C. Lunsford, E. Meredith, M.S. Mohr, and C. Villafana U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-142. 84 p.

Spatial segregation in eastern North Pacific skate assemblages Bizzarro, Joseph J., Kristin M. Broms, Miles G. Logsdon, David A. Ebert, Mary M. Yoklavich, Linda A. Kuhnz, and Adam P. Summers PLoS ONE 9(10):e109907 (26 p.)

Habitat assessment prioritization for the West Coast: Report of the Northwest and Southwest Regional Habitat Assessment Prioritization Working Groups Blackhart, Kristan (ed.), et al. NOAA National Marine Fisheries Service, Silver Spring, Maryland. 179 p.

Cohort resonance: a significant component of fluctuations in recruitment, egg production, and catch of fished populations Botsford, Louis W., Matthew D. Holland, John C. Field, and Alan Hastings ICES Journal of Marine Science 71(8):2158-2170

Phylogeography unplugged: comparative surveys in the genomic era Bowen, Brian W., Kartik Shanker, Nina Yasuda, Maria Celia (Machel) D. Malay, Sophie von der Heyden, Gustav Paulay, Luiz A. Rocha, Kimberly A. Selkoe, Paul H. Barber, Suzanne T. Williams, Harilaos A. Lessios, Eric D. Crandall, Giacomo Bernardi, Christopher P. Meyer, Kent E. Carpenter, and Robert J. Toonen Bulletin of Marine Science 90(1):13-46

Human dimensions of the CCIEA: a summary of concepts, methods, indicators, and assessments Breslow, Sara, Dan Holland, Phil Levin, Karma Norman, Melissa Poe, Cindy Thomson, Raz Barnea, Penny Dalton, Nives Dolsak, Correigh Greene, Kristin Hoelting, Stephen Kasperski, Rosemary Kosaka, Daniel Ladd, Aaron Mamula, Stacey Miller, Brit Sojka, Cameron Speir, Scott Steinbeck, and Nick Tolimieri In: C.J. Harvey et al. (eds.), The California Current Integrated Ecosystem Assessment: Phase III report. NOAA National Marine Fisheries Service.

Spatio-temporal temperature variation influences juvenile steelhead (Oncorhynchus mykiss) use of thermal refuges Brewitt, Kim S., and Eric M. Danner Ecosphere 5(7):92 (26 p.)

Environmental heterogeneity mediates juvenile salmonid use of thermal refuges Brewitt, Kimberly S. Ph.D. dissertation, University of California, Santa Cruz. 136 p.

Evaluating methods for setting catch limits in data-limited fisheries Carruthers, Thomas R., Andre E. Punt, Carl J. Walters, Alec MacCall, Murdoch K. McAllister, Edward J. Dick, and Jason Cope Fisheries Research 153:48-68

Evaluation of a single nucleotide polymorphism baseline for genetic stock identification of Chinook Salmon (Oncorhynchus tshawytscha) in the California Current large marine ecosystem Clemento, Anthony J., Eric D. Crandall, John Carlos Garza, and Eric C. Anderson Fishery Bulletin (U.S.) 112(2-3):112-130

Estimation of multi-output production functions in commercial fisheries Collier, Trevor C., Aaron Mamula, and John Ruggiero Omega 42(1):157-165

Magnificent dimensions, varied forms, and brilliant colors: the molecular ecology and evolution of the Indian and Pacific oceans Crandall, Eric D., and Cynthia Riginos Bulletin of Marine Science 90(1):1-11

Return of the ghosts of dispersal past: historical spread and contemporary gene flow in the blue sea star Linckia laevigata Crandall, Eric D., Eric A. Treml, Libby Liggins, Lachlan Gleeson, Nina Yasuda, Paul H. Barber, Gert Worheide, and Cynthia Riginos Bulletin of Marine Science 90(1):399-425

Auditory detection of ultrasonic coded transmitters by seals and sea lions Cunningham, Kane A., Sean A. Hayes, A. Michelle Wargo Rub, and Colleen Reichmuth Journal of the Acoustical Society of America 135(4):1978-1985

Catch-based estimates of sustainable yield for kelp greenling (Hexagrammos decagrammus) in waters off Oregon and Washington Dick, E.J. Report to the Pacific Fishery Management Council, Portland, Oregon. 5 p.

Catch-based estimates of sustainable yield for cabezon (Scorpaenichthys marmoratus) in waters off Washington Dick, E.J. Report to the Pacific Fishery Management Council, Portland, Oregon. 4 p.

Status and productivity of cowcod, Sebastes levis, in the Southern California Bight, 2013 Dick, E.J., and Alec D. MacCall Report to the Pacific Fishery Management Council, Portland, Oregon. 181 p.

Cowcod rebuilding analysis Dick, E.J., and Alec D. MacCall Report to the Pacific Fishery Management Council, Portland, Oregon. 19 p.

The influence of gear selectivity and spawning behavior on a data-poor assessment of a spawning aggregation fishery Erisman, Brad E., Ashley M. Apel, Alec D. MacCall, Martha J. Roman, and Rod Fujita Fisheries Research 159:75-87

Trade-offs between supportive and provisioning ecosystem services of forage species in marine food webs Essington, Timothy E., and Stephen B. Munch Ecological Applications 24(6):1543-1557

Stable isotope analysis of Humboldt squid prey: Comment on Miller et al. (2013) Field, John C., Steven Y. Litvin, Aaron Carlisle, Julia S. Stewart, William F. Gilly, and Rocio I. Ruiz-Cooley Marine Ecology Progress Series 500:281-285

Postsmolt growth and thermal regime define the marine survival of steelhead from the Keogh River, British Columbia Friedland, Kevin D., Bruce R. Ward, David W. Welch, and Sean A. Hayes Marine and Coastal Fisheries 6(1):1-11

The effects of disease-induced juvenile mortality on the transient and asymptotic population dynamics of Chinook salmon (Oncorhynchus tshawytscha) Fujiwara, Masami, Michael S. Mohr, and Aaron Greenberg PLOS ONE 9(1):e85464 (10 p.)

Population structure of steelhead in coastal California Garza, John Carlos, Elizabeth A. Gilbert-Horvath, Brian C. Spence, Thomas H. Williams, Heidi Fish, Stephen A. Gough, Joseph H. Anderson, David Hamm, and Eric C. Anderson Transactions of the American Fisheries Society 143(1):134-152

Interaction between mercury (Hg), arsenic (As) and selenium (Se) affects the activity of glutathione S-transferase in breast milk; possible relationship with fish and shellfish intake Gaxiola-Robles, Ramon, Vanessa Labrada-Martagon, Alfredo de Jesus Celis de la Rosa, Baudilio Acosta-Vargas, Lia Celina Mendez-Rodriguez, and Tania Zenteno-Savin Nutricion Hospitalaria 30(2):436-446

Complex dynamics may limit prediction in marine fisheries Glaser, Sarah M., Michael J. Fogarty, Hui Liu, Irit Altman, Chih-Hao Hsieh, Les Kaufman, Alec D. MacCall, Andrew A. Rosenberg, Hao Ye, and George Sugihara Fish and Fisheries 15(4):616-633

Selecting and evaluating indicators for habitats within the California Current Large Marine Ecosystem Greene, Correigh, Kelly Andrews, Tim Beechie, Dan Bottom, Richard Brodeur, Lisa Crozier, Aimee Fullerton, Lyndal Johnson, Elliott Hazen, Nate Mantua, Charles Menza, Mindi Sheer, Waldo Wakefield, Curt Whitmire, Mary Yoklavich, and Juan Zwolinski In: C.J. Harvey et al. (eds.), The California Current Integrated Ecosystem Assessment: Phase III report. NOAA National Marine Fisheries Service.

Performance of salmon fishery portfolios across western North America Griffiths, Jennifer R., Daniel E. Schindler, Jonathan B. Armstrong, Mark D. Scheuerell, Diane C. Whited, Robert A. Clark, Ray Hilborn, Carrie A. Holt, Steven T. Lindley, Jack A. Stanford, and Eric C. Volk Journal of Applied Ecology 51(6):1554-1563

Quantifying the role of woody debris in providing bioenergetically favorable habitat for juvenile salmon Hafs, Andrew W., Lee R. Harrison, Ryan M. Utz, and Thomas Dunne Ecological Modelling 285:30-38

Comparative estuarine and marine migration ecology of Atlantic salmon and steelhead: blue highways and open plains Hayes, Sean A., and John F. Kocik Reviews in Fish Biology and Fisheries 24(3):757-780

Oceanographic and climatic drivers and pressures Hazen, Elliott L., Isaac D. Schroeder, Jay Peterson, Bill Peterson, William J. Sydeman, Sarah A. Thompson, Brian K. Wells, Steven J. Bograd, and N. Garfield In: C.J. Harvey et al. (eds.), The California Current Integrated Ecosystem Assessment: Phase III report. NOAA National Marine Fisheries Service.

NMFS Southwest Fisheries Science Center: Draft agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee He, Xi, and John Field (eds.), John Hyde, Susan Sogard, Andrew Thompson, Cindy Thomson, and Mary Yoklavich In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 55th annual meeting of the TSC (April 29-30, 2014, Seattle, Washington), p. 287-300. Pacific States Marine Fisheries Commission.

Estimation of summer flounder (Paralichthys dentatus) mortality rates using mark-recapture data from a recreational angler-tagging program Henderson, M.J., and M.C. Fabrizio Fisheries Research 159:1-10

Life cycle modeling framework for Sacramento River winter-run Chinook salmon Hendrix, Noble, Anne Criss, Eric Danner, Correigh M. Greene, Hiroo Imaki, Andrew Pike, and Steven T. Lindley U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-530. 27 p.

Cryptic population structure in the severely depleted cowcod, Sebastes levis Hess, Jon E., Paul Chittaro, Anna Elz, Elizabeth A. Gilbert-Horvath, Victor Simon, and John Carlos Garza Canadian Journal of Fisheries and Aquatic Sciences 71(1):81-92

BOFFFFs: on the importance of conserving old-growth age structure in fishery populations Hixon, Mark A., Darren W. Johnson, and Susan M. Sogard ICES Journal of Marine Science 71(8):2171-2185

Billion-dollar fish: The untold story of Alaska Pollock, by Kevin M. Bailey [book review] Huff, David D. Quarterly Review of Biology 89(1):69-70

Self-organization of background habitat determines the nature of population spatial structure Jackson, Doug, David Allen, Ivette Perfecto, and John Vandermeer Oikos 123(6):751-761

Genetic analysis of trout (Oncorhynchus mykiss) in Southern California coastal rivers and streams Jacobson, Sandra, Jack Marshall, Dale Dalrymple, Frank Kawasaki, Devon Pearse, Alicia Abadia-Cardoso, and John Carlos Garza Final report for California Department of Fish and Wildlife, Fisheries Restoration Grant Program, Project no. 0950015 (30 p.)

Atmospheric controls on northeast Pacific temperature variability and change, 1900-2012 Johnstone, James A., and Nathan J. Mantua Proceedings of the National Academy of Sciences of the United States of America 111(40):14360-14365

Reply to Abatzoglou et al.: Atmospheric controls on northwest United States air temperatures, 1948-2012 Johnstone, James A., and Nathan J. Mantua Proceedings of the National Academy of Sciences of the United States of America 111(52):E5607-E5608

Ontogeny of critical swimming speeds for larval and pelagic juvenile rockfishes (Sebastes spp., family Scorpaenidae) Kashef, Neosha S., Susan M. Sogard, Rebecca Fisher, and John L. Largier Marine Ecology Progress Series 500:231-243

The scope of published population genetic data for Indo-Pacific marine fauna and future research opportunities in the region Keyse, Jude, Eric D. Crandall, Robert J. Toonen, Christopher P. Meyer, Eric A. Treml, and Cynthia Riginos Bulletin of Marine Science 90(1):47-78

Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2013 run Klamath River Technical Team Klamath River Technical Team. 20 p.

Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2014 season Klamath River Technical Team Klamath River Technical Team. 31 p.

State of the California Current 2013-2014: El Nino looming Leising, Andrew W., Isaac D. Schroeder, Steven J. Bograd, Eric P. Bjorkstedt, John Field, Keith Sakuma, Jeffrey Abell, Roxanne R. Robertson, Joe Tyburczy, William T. Peterson, Ric Brodeur, Caren Barcelo, Toby B. Auth, Elizabeth A. Daly, Gregory S. Campbell, John A. Hildebrand, Robert M. Suryan, Amanda J. Gladics, Cheryl A. Horton, Mati Kahru, Marlenne Manzano-Sarabia, Sam McClatchie, Edward D. Weber, William Watson, Jarrod A. Santora, Willam J. Sydeman, Sharon R. Melin, Robert L. DeLong, John Largier, Sungyong Kim, Francisco P. Chavez, Richard T. Golightly, Stephanie R. Schneider, Peter Warzybok, Russel Bradley, Jaime Jahncke, Jennifer Fisher, and Jay Peterson CalCOFI Reports 55:51-87

Early life history and fisheries oceanography: new questions in a changing world Llopiz, Joel K., Robert K. Cowen, Martha J. Hauff, Rubao Ji, Philip L. Munday, Barbara A. Muhling, Myron A. Peck, David E. Richardson, Susan Sogard, and Su Sponaugle Oceanography 27(4):26-41

Long time series in US fisheries oceanography McClatchie, Sam, Janet Duffy-Anderson, John C. Field, Ralf Goericke, Dave Griffith, David S. Hanisko, Jonathan A. Hare, Joanne Lyczkowski-Shultz, William T. Peterson, William Watson, Edward D. Weber, and Glenn Zapfe Oceanography 27(4):48-67

Morphological discrimination of genetically distinct Chinook Salmon populations: an example from California's Central Valley Merz, Joseph E., Thomas M. Garrison, Paul S. Bergman, Scott Blankenship, and John Carlos Garza North American Journal of Fisheries Management 34(6):1259-1269