NOAA FISHERIES

Isolation and characterization of microsatellites for jumbo squid Dosidicus gigas (Ommastrephidae) Millan-Marquez, Ana M., Cesar Salinas-Zavala, Pedro Cruz, and Devon E. Pearse Journal of Genetics 93:e38-e40. [http://www.ias.ac.in/jgenet/OnlineResources/93/e38.pdf]

A spatially distinct history of the development of California groundfish fisheries Miller, Rebecca R., John C. Field, Jarrod A. Santora, Isaac D. Schroeder, David D. Huff, Meisha Key, Done E. Pearson, and Alec D. MacCall PLOS ONE 9(6):e99758 (17 p.)

The Sacramento Harvest Model (SHM) Mohr, Michael S., and Michael R. O'Farrell U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-525. 27 p.

Documentation of a relational database for the California Recreational Fisheries Survey Onboard Observer Sampling Program, 1999-2011 Monk, Melissa, E.J. Dick, and Don Pearson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-529. 96 p.

Meeting our nation's needs for biological and environmental monitoring: strategic plan and recommendations for a national Animal Telemetry Network (ATN) through U.S. IOOS Moustahfid, Hassan, Michael Weise, Samantha Simmons, Barbara Block, Kim Holland, Jerry Ault, John Kocik, Daniel Costa, Steven T. Lindley, Bruce Mate, Sean Hayes, Christopher M. Holbrook, Andrew Seitz, Mike Arendt, John Payne, Behzad Mahmoudi, Charles Alexander, Peter Moore, James Price, and Doug Wilson U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-534. 7 p.

NMFS Science Center report in response to Council request: "Has Amendment 19 worked?" National Marine Fisheries Service Report to the Pacific Fishery Management Council, Portland, Oregon. 12 p.

Improving the science and management of data-limited fisheries: an evaluation of current methods and recommended approaches Newman, David, Tom Carruthers, Alec MacCall, Clay Porch, and Lisa Suatoni Natural Resources Defense Council, NRDC Report R:14-09-B, 36 p.

Annual state of the California Current Ecosystem report NMFS Northwest and Southwest Fisheries Science Centers Report to the Pacific Fishery Management Council. 20 p.

Subsidized predators and imperiled prey: the impact of avian predators on salmonids Osterback, Ann-Marie K. Ph.D. dissertation, University of California, Santa Cruz. 143 p.

Linking individual size and wild and hatchery ancestry to survival and predation risk of threatened steelhead (Oncorhynchus mykiss) Osterback, Ann-Marie K., Danielle M. Frechette, Sean A. Hayes, Morgan H. Bond, Scott A. Shaffer, and Jonathan W. Moore Canadian Journal of Fisheries and Aquatic Sciences 71(12):1877-1887

Review of Pacific coast groundfish essential fish habitat: Phase 2 report to the Pacific Fishery Management Council Pacific Fishery Management Council (Pacific Coast Groundfish Essential Fish Habitat Review Committee) Pacific Fishery Management Council, Portland, Oregon. 60 p.

Review of 2013 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 370 p.

Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2014 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 140 p.

Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2014 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 64 p.

Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2014 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 42 p.

Rapid parallel evolution of standing variation in a single, complex, genomic region is associated with life history in steelhead/rainbow trout Pearse, Devon E., Michael R. Miller, Alicia Abadia-Cardoso, and John Carlos Garza Proceedings of the Royal Society B: Biological Sciences 281(1783):20140012 (9 p.)

Shifting thresholds: rapid evolution of migratory life histories in steelhead/rainbow trout, Oncorhynchus mykiss Phillis, Corey C., Jonathan W. Moore, Mathieu Buoro, Sean A. Hayes, John Carlos Garza, and Devon E. Pearse PeerJ PrePrints 2:e361v1 (38 p.)

Emerging adaptation approaches for climate-ready fisheries management Pinsky, Malin L., and Nathan J. Mantua Oceanography 27(4):146-159

Basin isolation and oceanographic features influencing lineage divergence in the humbug damselfish (Dascyllus aruanus) in the Coral Triangle Raynal, J.M., E.D. Crandall, P.H. Barber, G.N. Mahardika, M.C. Lagman, and K.E. Carpenter Bulletin of Marine Science 90(1):513-532

Mapping migration in a songbird using high-resolution genetic markers Ruegg, Kristen C., Eric C. Anderson, Kristina L. Paxton, Vanessa Apkenas, Sirena Lao, Rodney B. Siegel, David F. DeSante, Frank Moore, and Thomas B. Smith Molecular Ecology 23(23):5726-5739

A role for migration-linked genes and genomic islands in divergence of a songbird Ruegg, Kristen, Eric C. Anderson, Jason Boone, Jazz Pouls, and Thomas B. Smith Molecular Ecology 23(19):4757-4769

Distribution patterns of Pacific halibut (Hippoglossus stenolepis) in relation to environmental variables along the continental shelf waters of the US West Coast and southern British Columbia Sadorus, Lauri L., Nathan J. Mantua, Timothy Essington, Barbara Hickey, and Steven Hare Fisheries Oceanography 23(3):225-241

Phenotypic complexity: integrated responses of life-history characters to multiple environmental factors Salinas, Santiago, and Stephan B. Munch Evolutionary Ecology Research 16(3):267-284

Spatio-temporal dynamics of ocean conditions and forage taxa reveal regional structuring of seabird-prey relationships Santora, Jarrod A., Isaac D. Schroeder, John C. Field, Brian K. Wells, and William J. Sydeman Ecological Applications 24(7):1730-1747

Use of genetic stock identification data for comparison of the ocean spatial distribution, size at age, and fishery exposure of an untagged stock and its indicator: California Coastal versus Klamath River Chinook salmon Satterthwaite, William H., Michael S. Mohr, Michael R. O'Farrell, Eric C. Anderson, Michael A. Banks, Sarah J. Bates, M. Renee Bellinger, Lisa A. Borgerson, Eric D. Crandall, John Carlos Garza, Brett J. Kormos, Peter W. Lawson, and Melodie L. Palmer-Zwahlen Transactions of the American Fisheries Society 143(1):117-133

Match-mismatch dynamics and the relationship between ocean-entry timing and relative ocean recoveries of Central Valley fall run Chinook salmon Satterthwaite, William H., Stephanie M. Carlson, Shanae D. Allen-Moran, Simone Vincenzi, Steven J. Bograd, and Brian K. Wells Marine Ecology Progress Series 511:237-248

Application of a data-assimilative regional ocean modeling system for assessing California Current System ocean conditions, krill, and juvenile rockfish interannual variability Schroeder, Isaac D., Jarrod A. Santora, Andrew M. Moore, Christopher A. Edwards, Jerome Fiechter, Elliott L. Hazen, Steven J. Bograd, John C. Field, and Brian K. Wells Geophysical Research Letters 41(16):5942-5950

SNP development from RNA-seq data in a nonmodel fish: how many individuals are needed for accurate allele frequency prediction? Schunter C., J.C. Garza, E. Macpherson, and M. Pascual Molecular Ecology Resources 14(1):157-165

Kinship analyses identify fish dispersal events on a temperate coastline Schunter, C., M. Pascual, J.C. Garza, N. Raventos, and E. Macpherson Proceedings of the Royal Society B: Biological Sciences 281(1785):20140556 (7 p.)

Port level fishing dynamics: assessing changes in the distribution of fishing activity over time Speir, Cameron, Caroline Pomeroy, and Jon G. Sutinen Marine Policy 46:171-191

Geographic variation in environmental factors regulating outmigration timing of coho salmon (Oncorhynchus kisutch) smolts Spence, Brian C., and E.J. Dick Canadian Journal of Fisheries and Aquatic Sciences 71(1):56-69

Linking Northeast Pacific recruitment synchrony to environmental variability Stachura, Megan M., Timothy E. Essington, Nathan J. Mantua, Anne B. Hollowed, Melissa A. Haltuch, Paul D. Spencer, Trevor A. Branch, and Miriam J. Doyle Fisheries Oceanography 23(5):389-408

Maternal influence on timing of parturition, fedundity, and larval quality in three shelf rockfishes (Sebastes spp.) Stafford, David M., Susan M. Sogard, and Steven A. Berkeley Aquatic Biology 21(1):11-24

Genetic pedigree inference of coho salmon: a powerful tool for guiding the management of an ESA-listed species Starks, Hilary A. Master's thesis, University of California, Santa Cruz. 141 p.

Combined climate- and prey-mediated range expansion of Humboldt squid (Dosidicus gigas), a large marine predator in the California Current System Stewart, Julia S., Elliott L. Hazen, Steven J. Bograd, Jarrette E.K. Byrnes, David G. Foley, William F. Gilly, Bruce H. Robison, and John C. Field Global Change Biology 20(6):1832-1843

Changes in California Chinook salmon diet over the past 50 years: relevance to the recent population crash Thayer, Julie A., John C. Field, and William J. Sydeman Marine Ecology Progress Series 498:249-261

A Bayesian approach to identifying and compensating for model misspecification in population models Thorson, James T., Kotaro Ono, and Stephan B. Munch Ecology 95(2):329-341

Report of the 3rd National Ecosystem Modeling Workshop (NEMoW 3): Mingling models for marine resource management – Multiple model inference Townsend, H.M., C. Harvey, K.Y. Aydin, R. Gamble, A. Gruss, P.S. Levin, J.S. Link, K.E. Osgood, J. Polovina, M.J. Schirripa, and B. Wells (eds.) NOAA Technical Memorandum NMFS-F/SPO-149. 93 p.

Inferring past demographic changes in a critically endangered marine fish after fishery collapse Valenzuela-Quinonez, Fausto, John Carlos Garza, Juan A. De-Anda-Montanez, and Francisco J. Garcia-de-Leon ICES Journal of Marine Science 71(7):1619-1628

Eco-evolutionary dynamics induced by massive mortality events Vincenzi, S., A.J. Crivelli, W.H. Satterthwaite, and M. Mangel Journal of Fish Biology 85(1):8-30

Rapid estimation of potential yield for data-poor Tapes philippinarum fisheries in North Adriatic coastal lagoons Vincenzi, Simone, Giulio A. De Leo, Cristina Munari, and Michele Mistri Hydrobiologia 724(1):267-277

Determining individual variation in growth and its implication for life-history and population processes using the Empirical Bayes method Vincenzi, Simone, Marc Mangel, Alain J. Crivelli, Stephan Munch, and Hans J. Skaug PLoS Computational Biology 10(9):e1003828 (16 p.)

Productivity change in U.S. catch share fisheries Walden, John, Juan Agar, Ron Felthoven, Abigail Harley, Stephen Kasperski, Jean Lee, Todd Lee, Aaron Mamula, Jessica Stephen, Andy Strelcheck, and Eric Thunberg U.S. Department of Commerce, NOAA Technical Memorandum NMFS-F/SPO-146. 137 p.

Public preferences for marine protected areas off the U.S. west coast: The significance of restrictions and size on economic value Wallmo, K., and R. Kosaka NOAA Technical Memorandum NMFS-F/SPO-144. 96 p.

Ecosystem modeling efforts at the NOAA/NMFS Southwest Fisheries Science Center Wells, Brian In: H.M. Townsend et al. (eds.), Report of the 3rd National Ecosystem Modeling Workshop (NEMoW 3): Mingling models for marine resource management – Multiple model inference, p. 28-33. NOAA Technical Memorandum NMFS-F/SPO-149.

Coastal pelagic and forage fishes Wells, Brian K., Richard D. Brodeur, John C. Field, Ed Weber, Andrew R. Thompson, Sam McClatchie, Paul R. Crone, Kevin T. Hill, and Caren Barcelo In: C.J. Harvey et al. (eds.), The California Current Integrated Ecosystem Assessment: Phase III report. NOAA National Marine Fisheries Service.

Pacific salmon Wells, Brian, Tom Wainwright, Cynthia Thomson, Thomas Williams, Nathan Mantua, Lisa Crozier, Sara Breslow, and Kurt Fresh In: C.J. Harvey et al. (eds.), The California Current Integrated Ecosystem Assessment: Phase III report. NOAA National Marine Fisheries Service.

So, you want to use next-generation sequencing in marine systems? Insight from the Pan-Pacific Advanced Studies Institute Willette, D.A., F.W. Allendorf, P.H. Barber, D.J. Barshis, K.E. Carpenter, E.D. Crandall, W.A. Cresko, I. Fernandez-Silva, M.V. Matz, E. Meyer, M.D. Santos, L.W. Seeb, and J.E. Seeb Bulletin of Marine Science 90(1):79-122

Ecological intregrity Williams, Gregory D., Kelly S. Andrews, Jameal F. Samhouri, Nick Tolimieri, Caren Barcelo, Richard D. Brodeur, John Field, Bill Peterson, and Andrew Thompson In: C.J. Harvey et al. (eds.), The California Current Integrated Ecosystem Assessment: Phase III report. NOAA National Marine Fisheries Service.

Fishery and hatchery effects on an endangered salmon population with low productivity Winship, Arliss J., Michael R. O'Farrell, and Michael S. Mohr Transactions of the American Fisheries Society 143(4):957-971

Human-occupied submersibles Yoklavich, Mary In: Undersea Imaging Workshop (Red Bank, New Jersey, January 14-15, 2014): workshop report, p. 30-32. New Jersey Sea Grant.

NOAA Fisheries SWFSC Habitat Ecology Team Yoklavich, Mary, Tom Laidig, Diana Watters, Lisa Krigsman, Andrew Taylor, and David Huff In: Visual Survey Methods Workshop (April 8-9, 2014, Alaska Fisheries Science Center, Seattle, Washington): Project profiles of workshop participants, p. 40-41. Canada-United States Groundfish Committee, Technical Sub-Committee.

Large-scale parentage analysis reveals reproductive patterns and heritability of spawn timing in a hatchery population of steelhead (Oncorhynchus mykiss) Abadia-Cardoso, Alicia, Eric C. Anderson, Devon E. Pearse and John Carlos Garza Molecular Ecology 22(18):4733-4746

Pronounced genetic structure in a highly mobile coral reef fish, Caesio cuning, in the Coral Triangle Ackiss, Amanda S., Shinta Pardede, Eric D. Crandall, Ma. Carmen A. Ablan-Lagman, Ambariyanto, November Romena, Paul H. Barber, and Kent E. Carpenter Marine Ecology Progress Series 480:185-197

Sample size recommendations for estimating stock composition using genetic stock identification (GSI) Allen-Moran, Shanae D., Wiliiam H. Satterthwaite, and Michael S. Mohr U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-513. 26 p.

The effects of surgically implanted acoustic transmitters on laboratory growth, survival and tag retention in hatchery yearling Chinook salmon Ammann, Arnold J., Cyril J. Michel, and R. Bruce MacFarlane Environmental Biology of Fishes 96(2-3):135-143

Ocean habitat of juvenile Chinook salmon at the southern end of their range [abstract] Ammann, Arnold J., David D. Huff, Sean A. Hayes, Jeffrey A. Harding, and R. Bruce MacFarlane In: Nancy D. Davis and Claudia Chan (eds.), 3rd International Workshop on Migration and Survival Mechanisms of Juvenile Salmon and Steelhead in Ocean Ecosystems (Honolulu, Hawaii, April 25-26, 2013), p. 70. North Pacific Anadromous Fish Commission, Technical Report 9.

Modeling the influence of flow on invertebrate drift across spatial scales using a 2D hydraulic model and a 1D population model Anderson, Kurt E., Lee R. Harrison, Roger M. Nisbet, and Allison Kolpas Ecological Modelling 265(10):207-220

Floodplain rehabilitation as a hedge against hydroclimatic uncertainty in a migration corridor of threatened steelhead Boughton, David A., and Andrew S. Pike Conservation Biology 27(6):1158-1168

A practical comparison of viability models used for management of endangered and threatened anadromous Pacific salmonids Busch, D. Shallin, David A. Boughton, Thomas Cooney, Peter Lawson, Steven T. Lindley, Michelle McClure, Mary H. Ruckelshaus, Norma Jean Sands, Brian C. Spence, Thomas C. Wainwright, Thomas H. Williams, and Paul McElhany North American Journal of Fisheries Management 33(6):1125-1141

Genetic diversity, population structure, and demographic history of exploited sea urchin populations (Tripneustes gratilla) in the Philippines Casilagan, Inggat Laya N., Marie Antonette Juinio-Menez, and Eric D. Crandall Journal of Experimental Marine Biology and Ecology 449:284-293

Diel movements of out-migrating Chinook salmon (Oncorhynchus tshawytscha) and steelhead trout (Oncorhynchus mykiss) smolts in the Sacramento/San Joaquin watershed Chapman, Eric D., Alex R. Hearn, Cyril J. Michel, Arnold J. Ammann, Steven T. Lindley, Michael J. Thomas, Philip T. Sandstrom, Gabriel P. Singer, Matthew L. Peterson, R. Bruce MacFarlane, and A. Peter Klimley Environmental Biology of Fishes 96(2-3):273-286

Creation and utilization of novel genetic methods for studying and improving management of Chinook salmon populations Clemento, Anthony J. Ph.D. dissertation, University of California, Santa Cruz. 160 p.

Genetic and phenotypic effects on reproductive outcomes for captively-reared coho salmon, Oncorhynchus kisutch Conrad, J. Louise, Elizabeth A. Gilbert-Horvath, and John Carlos Garza Aquaculture 404-405:95-104

Predicting climate effects on Pacific sardine Deyle, Ethan R., Michael Fogarty, Chih-hao Hsieh, Les Kaufman, Alec D. MacCall, Stephan B. Munch, Charles T. Perretti, Hao Ye, and George Sugihara Proceedings of the National Academy of Sciences of the United States of America 110(16):6430-6435

Potential impacts of ocean energy projects on migration and habitat use of green sturgeon (Acipenser medirostris) Erickson, Daniel L., Michael Donnellan, Steve Lindley, and John Payne In: George W. Boehlert et al. (eds.), Oregon Marine Renewable Energy Environmental Science Conference proceedings, p. 34-35. U.S. Department of the Interior, Bureau of Ocean Energy Management, Pacific Region, OCS Study BOEM 2013-0113.

Rebuilding analysis for bocaccio in 2011 Field, John C. Report to the Pacific Fishery Management Council, Portland, Oregon. 16 p.

Status of bocaccio, Sebastes paucispinis, in the Conception, Monterey and Eureka INPFC areas as evaluated for 2013 Field, John C. Report to the Pacific Fishery Management Council, Portland, Oregon. 78 p.

Foraging ecology and movement patterns of jumbo squid (Dosidicus gigas) in the California Current system Field, John C., Carl Elliger, Ken Baltz, Graham E. Gillespie, William F. Gilly, R.I. Ruiz-Cooley, Devon Pearse, Julia S. Stewart, William Matsubu, and William A. Walker Deep Sea Research II 95:37-51

A bioenergetics approach to assessing potential impacts of avian predation on juvenile steelhead during freshwater rearing Frechette, Danielle, Alison L. Collins, James T. Harvey, Sean A. Hayes, David D. Huff, Andrew W. Jones, Nicolas A. Retford, Alina E. Langford, Jonathan W. Moore, Ann-Marie K. Osterback, William H. Satterthwaite, and Scott A. Shaffer North American Journal of Fisheries Management 33(5):1024-1038

Genetic and maternal variation in early growth in the Atlantic silverside Menidia menidia Gao, Jin, and Stephan B. Munch Marine Ecology Progress Series 485:211-222

Ichthyological assemblage and variation in a Northern California Zostera marine eelgrass bed Garwood, Rebecca S., Timothy J. Mulligan, and Eric P. Bjorkstedt Northwestern Naturalist 94(1):35-50

A California Current bomb radiocarbon reference chronology and petrale sole (Eopsetta jordani) age validation Haltuch, Melissa A., Owen S. Hamel, Kevin R. Piner, Patrick McDonald, Craig R. Kastelle, and John C. Field Canadian Journal of Fisheries and Aquatic Sciences 70(1):22-31

Coastal association of juvenile Chinook salmon and krill in the northern California Current [abstract] Hassrick, Jason L., William J. Sydeman, Jarrod A. Santora, and Sean A. Hayes In: Nancy D. Davis and Claudia Chan (eds.), 3rd International Workshop on Migration and Survival Mechanisms of Juvenile Salmon and Steelhead in Ocean Ecosystems (Honolulu, Hawaii, April 25-26, 2013), p. 76. North Pacific Anadromous Fish Commission, Technical Report 9.

Mobile receivers: releasing the mooring to 'see' where fish go Hayes, Sean A., Nicole M. Teutschel, Cyril J. Michel, Cory Champagne, Patrick W. Robinson, Melinda Fowler, Tina Yack, David K. Mellinger, Samantha Simmons, Daniel P. Costa, and R. Bruce MacFarlane Environmental Biology of Fishes 96(2-3):189-201

Oceanographic and climatic drivers and pressures Hazen, Elliott L., Isaac D. Schroeder, Jay Peterson, William T. Peterson, William J. Sydeman, Sarah A. Thompson, Brian K. Wells, and Steven J. Bograd In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 13-70. U.S. NOAA National Marine Fisheries Service.

NMFS Southwest Fisheries Science Center: Draft agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee He, Xi, and John Field (eds.), John Hyde, Andrew Thompson, Cindy Thomson, Susan Sogard, and Mary Yoklavich In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 54th annual meeting of the TSC (April 30-May 1, 2013, Seattle, Washington), p. 261-273. Pacific States Marine Fisheries Commission.

Status of the U.S. Pacific sanddab resource in 2013 He, Xi, Donald E. Pearson, John C. Field, Lyndsey Lefebvre, and Meisha Key Report to the Pacific Fishery Management Council, Portland, Oregon. 344 p.

Extreme plasticity in life-history strategy allows a migratory predator (jumbo squid) to cope with a changing climate Hoving, Henk-Jan T., William F. Gilly, Unai Markaida, Kelly J. Benoit-Bird, Zachary W.-Brown, Patrick Daniel, John C. Field, Liz Parassenti, Bilin Liu, and Bernardita Campos Global Change Biology 19(7):2089-2103

Oceans and marine resources in a changing climate Howard, Jennifer, Eleanora Babij, Roger Griffis, Brian Helmuth, Amber Himes-Cornell, Paul Niemier, Michael Orbach,Laura Petes, Stewart Allen, Guillermo Auad, Carol Auer, Russell Beard, Mary Boatman, Nicholas Bond, Timothy Boyer, David Brown, Patricia Clay, Katherine Crane, Scott Cross, Michael Dalton, Jordan Diamond, Robert Diaz, Quay Dortch, Emmett Duffy, Deborah Fauquier, William Fisher, Michael Graham, Benjamin Halpern, Lara Hansen, Bryan Hayum, Samuel Herrick, Anne Hollowed, David Hutchins, Elizabeth Jewett, Di Jin, Nancy Knowlton, Dawn Kotowicz, Trond Kristiansen, Peter Little, Cary Lopez, Philip Loring, Rick Lumpkin, Amber Mace, Kathryn Mengerink, J. Ru Morrison, Jason Murray, Karma Norman, James O'Donnell, James Overland, Rost Parsons, Neal Pettigrew, Lisa Pfeiffer, Emily Pidgeon, Mark Plummer, Jeffrey Polovina, Josie Quintrell, Teressa Rowles, Jeffrey Runge, Michael Rust, Eric Sanford, Uwe Send, Merrill Singer, Cameron Speir, Diane Stanitski, Carol Thornber, Cara Wilson, and Yan Xue Oceanography and Marine Biology: An Annual Review 51:71-192

Environmental factors that influence the distribution, size, and biotic relationships of the Christmas tree coral Antipathes dendrochristos in the Southern California Bight Huff, David D., Mary M. Yoklavich, Milton S. Love, Diana L. Watters, Fei Chai, and Steven T. Lindley Marine Ecology Progress Series 494:159-177

Impacts of depleting forage species in the California Current Kaplan, Isaac C., Christopher J. Brown, Elizabeth A. Fulton, Iris A. Gray, John C. Field, and Anthony D.M. Smith Environmental Conservation 40(4):380-393

Appendix MS3: Impacts of depleting forage species in the California Current [abstract] Kaplan, Isaac C., Christopher J. Brown, Elizabeth A. Fulton, Iris A. Gray, John C. Field, and Anthony D.M. Smith In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 860. U.S. NOAA National Marine Fisheries Service.

Management testing and scenarios in the California Current Kaplan, Isaac C., Dan S. Holland, Ian G. Taylor, Kurt L. Fresh, Phillip S. Levin, Iris A. Gray, Jerry Leonard, Kristin Marshall, Blake E. Feist, Mark L. Plummer, Cynthia Thomson, Noble Hendrix, Elizabeth A. Fulton, Christopher J. Brown, John C. Field, and Anthony D. Smith In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 730-778. U.S. NOAA National Marine Fisheries Service.

Motivations for proactive environmental management Khanna, Madhu, and Cameron Speir Sustainability 5(6):2664-2692

Contemporary population structure in Klamath River basin Chinook Salmon revealed by analysis of microsatellite genetic data Kinziger, Andrew P., Michael Hellmair, David G. Hankin, and John Carlos Garza Transactions of the American Fisheries Society 142(5):1347-1357

Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2012 run Klamath River Technical Team Klamath River Technical Team. 18 p.

Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2013 season Klamath River Technical Team Klamath River Technical Team. 31 p.

A summary of the use of electronic tagging to provide insights into salmon migration and survival Klimley, A. Peter, R. Bruce MacFarlane, Phillip T. Sandstrom, and Stephen T. Lindley Environmental Biology of Fishes 96(2-3):419-428

Reactions of fishes to two underwater survey tools, a manned submersible and a remotely operated vehicle Laidig, Thomas E., Lisa M. Krigsman, and Mary M. Yoklavich Fishery Bulletin 111(1):54-67

Does fish larval dispersal differ between high and low latitudes? Leis, Jeffrey M., Jennifer E. Caselle, Ian R. Bradbury, Trond Kristiansen, Joel K. Llopiz, Michael J. Miller, Mary I. O'Connor, Claire B. Paris, Alan L. Shanks, Susan M. Sogard, Stephen E. Swearer, Eric A. Treml, Russell D. Vetter, and Robert R. Warner Proceedings of the Royal Society B 280(1759):20130327 (9 p.)

Preface Levin, Phillip S., and Brian K. Wells In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. iv-vii. U.S. NOAA National Marine Fisheries Service.

Integrated ecosystem assessment of the California Current: Phase II report 2012 Levin, Phillip S., Brian K. Wells, and Mindi B. Sheer (eds.) U.S. NOAA National Marine Fisheries Service. 958 p.

Climate, fishing, and fluctuations of sardine and anchovy in the California Current Lindegren, Martin, David M. Checkley Jr., Tristan Rouyer, Alec D. MacCall, and Nils Chr. Stenseth Proceedings of the National Academy of Sciences of the United States of America 110(33):13672-13677

Developing the capacity to assess policy priorities - Engagement with stakeholders and managers Lovewell, Mark A., Isaac C. Kaplan, Yvonne deReynier, Mindi B. Sheer, Ruth Howell, Lisa Wooninck, Joshua Lindsay, Phillip S. Levin, and Brian K. Wells In: Phillip S. Levin, Brian K. Wells, and Mindi B. Sheer (eds.), Integrated ecosystem assessment of the California Current: Phase II report 2012, p. 1-12. U.S. NOAA National Marine Fisheries Service.

Use of the delta method to evaluate the precision of assessments that fix parameter values MacCall, Alec D. Fisheries Research 142:56-60

A hybrid stock synthesis - Virtual population analysis model of Pacific bluefin tuna MacCall, Alec D., and Steven L.H. Teo Fisheries Research 142:22-26

Fukushima-derived radiocesium in highly migratory Pacific predators [abstract] Madigan, Daniel J., Zosia Baumann, Stephen Munch, Brian N. Popp, Barbara A. Block, and Nicholas S. Fisher American Chemical Society, 245th National Meeting and Exposition (April 7-11, 2013, New Orleans, Louisiana), Meeting abstract 8-AGFD.

Proceedings of the National Marine Fisheries Service Productivity Workshop (Santa Cruz, CA, June 11-12, 2012) Mamula, Aaron, and John Walden (eds.) U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-503. 262 p.

A perspective on steepness, reference points, and stock assessment Mangel, Marc, Alec D. MacCall, Jon Brodziak, E.J. Dick, Robyn E. Forrest, Roxanna Pourzand, and Stephen Ralston Canadian Journal of Fisheries and Aquatic Sciences 70(6):930-940