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SWFSC Publications Search

The SWFSC publications website serves as an archival repository of documents published and/or authored by SWFSC staff and funded partners. As a repository, the SWFSC publications website retains documents in their original published format to ensure public access to scientific information.

       

2,239 Search Result(s)

Division: Fisheries Ecology Division

Odors from marine plastic debris elicit foraging behavior in sea turtles

Pfaller, Joseph B., Kayla M. Goforth, Michael A. Gil, Matthew S. Savoca, and Kenneth J. Lohmann
2020
Current Biology 30(5):R213-R214
https://doi.org/10.1016/j.cub.2020.01.071
Odors from marine plastic debris elicit foraging behavior in sea turtles Pfaller, Joseph B., Kayla M. Goforth, Michael A. Gil, Matthew S. Savoca, and Kenneth J. Lohmann Current Biology 30(5):R213-R214
2020Pfaller
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Decoding collective communications using information theory tools

Pilkiewicz, K.R., B.H. Lemasson, M.A. Rowland, A. Hein, J. Sun, A. Berdahl, M.L. Mayo, J. Moehlis, M. Porfiri, E. Fernandez-Juricic, S. Garnier, E.M. Bollt, J.M. Carlson, M.R. Tarampi, K.L. Macuga, L. Rossi, and C.-C. Shen
2020
Journal of the Royal Society Interface 17(164):20190563 (16 p.)
https://doi.org/10.1098/rsif.2019.0563
Decoding collective communications using information theory tools Pilkiewicz, K.R., B.H. Lemasson, M.A. Rowland, A. Hein, J. Sun, A. Berdahl, M.L. Mayo, J. Moehlis, M. Porfiri, E. Fernandez-Juricic, S. Garnier, E.M. Bollt, J.M. Carlson, M.R. Tarampi, K.L. Macuga, L. Rossi, and C.-C. Shen Journal of the Royal Society Interface 17(164):20190563 (16 p.)
2020Pilkiewicz
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Glacier retreat and Pacific salmon

Pitman, Kara J., Jonathan W. Moore, Matthew R. Sloat, Anne H. Beaudreau, Allison L. Bidlack, Richard E. Brenner, Eran W. Hood, George R. Pess, Nathan J. Mantua, Alexander M. Milner, Valentina Radic, Gordon H. Reeves, Daniel E. Schindler, and Diane C. Whited
2020
BioScience 70(3):220-236
https://doi.org/10.1093/biosci/biaa015
Glacier retreat and Pacific salmon Pitman, Kara J., Jonathan W. Moore, Matthew R. Sloat, Anne H. Beaudreau, Allison L. Bidlack, Richard E. Brenner, Eran W. Hood, George R. Pess, Nathan J. Mantua, Alexander M. Milner, Valentina Radic, Gordon H. Reeves, Daniel E. Schindler, and Diane C. Whited BioScience 70(3):220-236
2020Pitman2
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The multiple population genetic and demographic routes to islands of genomic divergence

Quilodran, Claudio S., Kristen Ruegg, Ashley T. Sendell-Price, Eric C. Anderson, Tim Coulson, and Sonya M. Clegg
2020
Methods in Ecology and Evolution 11(1):6-21
https://doi.org/10.1111/2041-210X.13324
The multiple population genetic and demographic routes to islands of genomic divergence Quilodran, Claudio S., Kristen Ruegg, Ashley T. Sendell-Price, Eric C. Anderson, Tim Coulson, and Sonya M. Clegg Methods in Ecology and Evolution 11(1):6-21
2020Quilodran
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Restoration-mediated secondary contact leads to introgression of alewife ecotypes separated by a colonial-era dam

Reid, Kerry, John Carlos Garza, Steven R. Gephard, Adalgisa Caccone, David M. Post, and Eric P. Palkovacs
2020
Evolutionary Applications 13(4):652-664
https://doi.org/10.1111/eva.12890
Restoration-mediated secondary contact leads to introgression of alewife ecotypes separated by a colonial-era dam Reid, Kerry, John Carlos Garza, Steven R. Gephard, Adalgisa Caccone, David M. Post, and Eric P. Palkovacs Evolutionary Applications 13(4):652-664
2020Reid
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Climate-driven variability in Euphausia pacifica size distributions off northern California

Robertson, Roxanne R., and Eric P. Bjorkstedt
2020
Progress in Oceanography 188:102412 (19 p.)
https://doi.org/10.1016/j.pocean.2020.102412
Climate-driven variability in Euphausia pacifica size distributions off northern California Robertson, Roxanne R., and Eric P. Bjorkstedt Progress in Oceanography 188:102412 (19 p.)
2020Robertson
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Hidden similarities in the dynamics of a weakly synchronous marine metapopulation

Rogers, Tanya L., and Stephan B. Munch
2020
Proceedings of the National Academy of Sciences of the United States of America 117(1):479-485
https://doi.org/10.1073/pnas.1910964117
Hidden similarities in the dynamics of a weakly synchronous marine metapopulation Rogers, Tanya L., and Stephan B. Munch Proceedings of the National Academy of Sciences of the United States of America 117(1):479-485
2020Rogers
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Trophic control changes with season and nutrient loading in lakes

Rogers, Tanya L., Stephan B. Munch, Simon D. Stewart, Eric P. Palkovacs, Alfredo Giron-Nava, Shin-ichiro S. Matsuzaki, and Celia C. Symons
2020
Ecology Letters 23(8):1287-1297
https://doi.org/10.1111/ele.13532
Trophic control changes with season and nutrient loading in lakes Rogers, Tanya L., Stephan B. Munch, Simon D. Stewart, Eric P. Palkovacs, Alfredo Giron-Nava, Shin-ichiro S. Matsuzaki, and Celia C. Symons Ecology Letters 23(8):1287-1297
2020Rogers2
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Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon

Rougemont, Quentin, Jean-Sebastien Moore, Thibault Leroy, Eric Normandeau, Ruth E. Withler, Donald M. Van Doornik, Penelope A. Crane, Kerry A. Naish, John Carlos Garza, Terry D. Beacham, Ben F. Koop, and Louis Bernatchez
2020
PLoS Genetics 16(8):e1008348 (29 p.)
https://doi.org/10.1371/journal.pgen.1008348
Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon Rougemont, Quentin, Jean-Sebastien Moore, Thibault Leroy, Eric Normandeau, Ruth E. Withler, Donald M. Van Doornik, Penelope A. Crane, Kerry A. Naish, John Carlos Garza, Terry D. Beacham, Ben F. Koop, and Louis Bernatchez PLoS Genetics 16(8):e1008348 (29 p.)
2020Rougemont
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California Current seascape influences juvenile salmon foraging ecology at multiple scales

Sabal, Megan C., Elliott L. Hazen, Steven J. Bograd, R. Bruce MacFarlane, Isaac D. Schroeder, Sean A. Hayes, Jeffrey A. Harding, Kylie L. Scales, Peter I. Miller, Arnold J. Ammann, and Brian K. Wells
2020
Marine Ecology Progress Series 634:159-173
https://doi.org/10.3354/meps13185
California Current seascape influences juvenile salmon foraging ecology at multiple scales Sabal, Megan C., Elliott L. Hazen, Steven J. Bograd, R. Bruce MacFarlane, Isaac D. Schroeder, Sean A. Hayes, Jeffrey A. Harding, Kylie L. Scales, Peter I. Miller, Arnold J. Ammann, and Brian K. Wells Marine Ecology Progress Series 634:159-173
2020Sabal
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Lower river survival of juvenile steelhead in the Sacramento River watershed

Sandstrom, Philip Thomas, Arnold J. Ammann, Cyril Michel, Gabriel Singer, Eric D. Chapman, Robert Bruce MacFarlane, Steven T. Lindley, and Abbott Peter Klimley
2020
Environmental Biology of Fishes 103:531-541
https://doi.org/10.1007/s10641-020-00954-z
Lower river survival of juvenile steelhead in the Sacramento River watershed Sandstrom, Philip Thomas, Arnold J. Ammann, Cyril Michel, Gabriel Singer, Eric D. Chapman, Robert Bruce MacFarlane, Steven T. Lindley, and Abbott Peter Klimley Environmental Biology of Fishes 103:531-541
2020Sandstrom
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Geographic structuring of Antarctic penguin populations

Santora, Jarrod A., Michelle A. LaRue, and David G. Ainley
2020
Global Ecology and Biogeography 29(10):1716-1728
https://doi.org/10.1111/geb.13144
Geographic structuring of Antarctic penguin populations Santora, Jarrod A., Michelle A. LaRue, and David G. Ainley Global Ecology and Biogeography 29(10):1716-1728
2020Santora2
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Habitat compression and ecosystem shifts as potential links between marine heatwave and record whale entanglements

Santora, Jarrod A., Nathan J. Mantua, Isaac D. Schroeder, John C. Field, Elliott L. Hazen, Steven J. Bograd, William J. Sydeman, Brian K. Wells, John Calambokidis, Lauren Saez, Dan Lawson, and Karin A. Forney
2020
Nature Communications 11:536 (12 p.)
https://doi.org/10.1038/s41467-019-14215-w
Habitat compression and ecosystem shifts as potential links between marine heatwave and record whale entanglements Santora, Jarrod A., Nathan J. Mantua, Isaac D. Schroeder, John C. Field, Elliott L. Hazen, Steven J. Bograd, William J. Sydeman, Brian K. Wells, John Calambokidis, Lauren Saez, Dan Lawson, and Karin A. Forney Nature Communications 11:536 (12 p.)
2020Santora
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Ecological thresholds in forecast performance for key United States West Coast Chinook salmon stocks

Satterthwaite, William H., Kelly S. Andrews, Brian J. Burke, Jennifer L. Gosselin, Correigh M. Greene, Chris J. Harvey, Stuart H. Munsch, Michael R. O'Farrell, Jameal F. Samhouri, and Kathryn L. Sobocinski
2020
ICES Journal of Marine Science 77(4):1503-1515
https://doi.org/10.1093/icesjms/fsz189
Ecological thresholds in forecast performance for key United States West Coast Chinook salmon stocks Satterthwaite, William H., Kelly S. Andrews, Brian J. Burke, Jennifer L. Gosselin, Correigh M. Greene, Chris J. Harvey, Stuart H. Munsch, Michael R. O'Farrell, Jameal F. Samhouri, and Kathryn L. Sobocinski ICES Journal of Marine Science 77(4):1503-1515
2020Satterthwaite
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The genomic landscape of divergence across the speciation continuum in island-colonising silvereyes (Zosterops lateralis)

Sendell-Price, Ashley T., Kristen C. Ruegg, Eric C. Anderson, Claudio S. Quilogran, Benjamin M. Van Doren, Vinh L. Underwood, Tim Coulson, and Sonya M. Clegg
2020
G3: Genes, Genomes, Genetics 10(9):3147-3163
https://doi.org/10.1534/g3.120.401352
The genomic landscape of divergence across the speciation continuum in island-colonising silvereyes (Zosterops lateralis) Sendell-Price, Ashley T., Kristen C. Ruegg, Eric C. Anderson, Claudio S. Quilogran, Benjamin M. Van Doren, Vinh L. Underwood, Tim Coulson, and Sonya M. Clegg G3: Genes, Genomes, Genetics 10(9):3147-3163
2020SendellPrice
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Historic drought influences outmigration dynamics of juvenile fall and spring-run Chinook Salmon

Singer, Gabriel P., Eric D. Chapman, Arnold J. Ammann, A. Peter Klimley, Andrew L. Rypel, Nann A. Fangue
2020
Environmental Biology of Fishes 103(5):543-559
https://doi.org/10.1007/s10641-020-00975-8
Historic drought influences outmigration dynamics of juvenile fall and spring-run Chinook Salmon Singer, Gabriel P., Eric D. Chapman, Arnold J. Ammann, A. Peter Klimley, Andrew L. Rypel, Nann A. Fangue Environmental Biology of Fishes 103(5):543-559
2020Singer
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Measuring health conditions and behaviours in fishing industry participants and fishing communities using the Behavioral Risk Factor Surveillance Survey (BRFSS)

Speir, Cameron, Corey Ridings, Jennifer Marcum, Michael Drexler, and Karma Norman
2020
ICES Journal of Marine Science 77(5):1830-1840
https://doi.org/10.1093/icesjms/fsaa032
Measuring health conditions and behaviours in fishing industry participants and fishing communities using the Behavioral Risk Factor Surveillance Survey (BRFSS) Speir, Cameron, Corey Ridings, Jennifer Marcum, Michael Drexler, and Karma Norman ICES Journal of Marine Science 77(5):1830-1840
2020Speir
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A multi-scale model-based inquiry into ecological data for watershed management applications

Sridharan, Vamsi Krishna
2020
In: Rosanna La Plante and John J. Ramirez-Avila (eds.), Watershed Management Conference 2020: A clear vision of watershed management, p. 151-161. American Society of Civil Engineers.
https://doi.org/10.1061/9780784483060.014
A multi-scale model-based inquiry into ecological data for watershed management applications Sridharan, Vamsi Krishna In: Rosanna La Plante and John J. Ramirez-Avila (eds.), Watershed Management Conference 2020: A clear vision of watershed management, p. 151-161. American Society of Civil Engineers.
2020Sridharan
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Resolving selenium exposure risk: Spatial, temporal, and tissue-specific variability of an endemic fish in a large, dynamic estuary

Stewart, A. Robin, Frederick Feyrer, and Rachel C. Johnson
2020
Science of the Total Environment 707:135919 (13 p.)
https://doi.org/10.1016/j.scitotenv.2019.135919
Resolving selenium exposure risk: Spatial, temporal, and tissue-specific variability of an endemic fish in a large, dynamic estuary Stewart, A. Robin, Frederick Feyrer, and Rachel C. Johnson Science of the Total Environment 707:135919 (13 p.)
2020Stewart
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Unnatural selection of salmon life histories in a modified riverscape

Sturrock, Anna M., Stephanie M. Carlson, John D. Wikert, Tim Heyne, Sebastien Nussle, Joseph E. Merz, Hugh J.W. Sturrock, and Rachel C. Johnson
2020
Global Change Biology 26(3):1235-1247
https://doi.org/10.1111/gcb.14896
Unnatural selection of salmon life histories in a modified riverscape Sturrock, Anna M., Stephanie M. Carlson, John D. Wikert, Tim Heyne, Sebastien Nussle, Joseph E. Merz, Hugh J.W. Sturrock, and Rachel C. Johnson Global Change Biology 26(3):1235-1247
2020Sturrock
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Ontogenetic patterns in the calcification and element incorporation in fin rays of age-0 White Sturgeon

Sweeney, Jamie K., Malte Willmes, Kirsten Sellheim, Levi S. Lewis, James A. Hobbs, Nann A. Fangue, and Joseph E. Merz
2020
Environmental Biology of Fishes 103(11):1401-1418
https://doi.org/10.1007/s10641-020-01031-1
Ontogenetic patterns in the calcification and element incorporation in fin rays of age-0 White Sturgeon Sweeney, Jamie K., Malte Willmes, Kirsten Sellheim, Levi S. Lewis, James A. Hobbs, Nann A. Fangue, and Joseph E. Merz Environmental Biology of Fishes 103(11):1401-1418
2020Sweeney
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Integrated hydrologic modeling to untangle the impacts of water management during drought

Thatch, Lauren M., James M. Gilbert, and Reed M. Maxwell
2020
Groundwater 58(3):377-391
https://doi.org/10.1111/gwat.12995
Integrated hydrologic modeling to untangle the impacts of water management during drought Thatch, Lauren M., James M. Gilbert, and Reed M. Maxwell Groundwater 58(3):377-391
2020Thatch
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A complex phenotype in salmon controlled by a simple change in migratory timing

Thompson, Neil F., Eric C. Anderson, Anthony J. Clemento, Matthew A. Campbell, Devon E. Pearse, James W. Hearsey, Andrew P. Kinziger, and John Carlos Garza
2020
Science 370(6516):609-613
https://doi.org/10.1126/science.aba9059
A complex phenotype in salmon controlled by a simple change in migratory timing Thompson, Neil F., Eric C. Anderson, Anthony J. Clemento, Matthew A. Campbell, Devon E. Pearse, James W. Hearsey, Andrew P. Kinziger, and John Carlos Garza Science 370(6516):609-613
2020Thompson
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Estimating habitat capacity for spring-run Chinook salmon and steelhead in the North Fork Feather River Watershed

Volk, Carol, David A. Boughton, and Lee R. Harrison
2020
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-633. 56 p.
https://doi.org/10.25923/a9n9-bn08
Estimating habitat capacity for spring-run Chinook salmon and steelhead in the North Fork Feather River Watershed Volk, Carol, David A. Boughton, and Lee R. Harrison U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-633. 56 p.
2020Volk
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Implementing ecosystem-based management principles in the design of a salmon ocean ecology program

Wells, Brian K., David D. Huff, Brian J. Burke, Richard D. Brodeur, Jarrod A. Santora, John C. Field, Kate Richerson, Nathan J. Mantua, Kurt L. Fresh, Michelle M. McClure, William H. Satterthwaite, Forbes Darby, Su J. Kim, Richard W. Zabel, and Steven T. Lindley
2020
Frontiers in Marine Science 7:342 (24 p.)
https://doi.org/10.3389/fmars.2020.00342
Implementing ecosystem-based management principles in the design of a salmon ocean ecology program Wells, Brian K., David D. Huff, Brian J. Burke, Richard D. Brodeur, Jarrod A. Santora, John C. Field, Kate Richerson, Nathan J. Mantua, Kurt L. Fresh, Michelle M. McClure, William H. Satterthwaite, Forbes Darby, Su J. Kim, Richard W. Zabel, and Steven T. Lindley Frontiers in Marine Science 7:342 (24 p.)
2020Wells2
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Marine ecosystem variations over the North Pacific and their linkage to large-scale climate variability and change

Yati, Emi, Shoshiro Minobe, Nathan Mantua, Shin-ichi Ito, and Emanuele Di Lorenzo
2020
Frontiers in Marine Science 7:578165 (15 p.)
https://doi.org/10.3389/fmars.2020.578165
Marine ecosystem variations over the North Pacific and their linkage to large-scale climate variability and change Yati, Emi, Shoshiro Minobe, Nathan Mantua, Shin-ichi Ito, and Emanuele Di Lorenzo Frontiers in Marine Science 7:578165 (15 p.)
2020Yati
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Effect of release timing on apparent survival of juvenile fall run Chinook Salmon from Coleman National Fish Hatchery

Zeug, Steven C., Robert Null, Annie Brodsky, Myfanwy Johnston, and Arnold J. Ammann
2020
Environmental Biology of Fishes 103(5):411-423
https://doi.org/10.1007/s10641-020-00968-7
Effect of release timing on apparent survival of juvenile fall run Chinook Salmon from Coleman National Fish Hatchery Zeug, Steven C., Robert Null, Annie Brodsky, Myfanwy Johnston, and Arnold J. Ammann Environmental Biology of Fishes 103(5):411-423
2020Zeug
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Anadromy redux? Genetic analysis to inform development of an indigenous American River steelhead broodstock

Abadia-Cardoso, Alicia, Annie Brodsky, Bradley Cavallo, Martha Arciniega, John Carlos Garza, John Hannon, and Devon E. Pearse
2019
Journal of Fish and Wildlife Management 10(1):137-147
https://doi.org/10.3996/072018-JFWM-063
Anadromy redux? Genetic analysis to inform development of an indigenous American River steelhead broodstock Abadia-Cardoso, Alicia, Annie Brodsky, Bradley Cavallo, Martha Arciniega, John Carlos Garza, John Hannon, and Devon E. Pearse Journal of Fish and Wildlife Management 10(1):137-147
2019AbadiaCardoso
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Warm winters reduce landscape-scale variability in the duration of egg incubation for coho salmon (Oncorhynchus kisutch) on the Copper River Delta, Alaska

Adelfio, Luca A., Steve M. Wondzell, Nathan J. Mantua, and Gordon H. Reeves
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(8):1362-1375
https://doi.org/10.1139/cjfas-2018-0152
Warm winters reduce landscape-scale variability in the duration of egg incubation for coho salmon (Oncorhynchus kisutch) on the Copper River Delta, Alaska Adelfio, Luca A., Steve M. Wondzell, Nathan J. Mantua, and Gordon H. Reeves Canadian Journal of Fisheries and Aquatic Sciences 76(8):1362-1375
2019Adelfio
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Larval dispersal of nearshore rockfishes

Baetscher, Diana S.
2019
Ph.D. dissertation, University of California, Santa Cruz. 173 p.
Larval dispersal of nearshore rockfishes Baetscher, Diana S. Ph.D. dissertation, University of California, Santa Cruz. 173 p.
2019Baetscher
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Dispersal of a nearshore marine fish connects marine reserves and adjacent fished areas along an open coast

Baetscher, Diana S., Eric C. Anderson, Elizabeth A. Gilbert-Horvath, Daniel P. Malone, Emily T. Saarman, Mark H. Carr, and John Carlos Garza
2019
Molecular Ecology 28(7):1611-1623
https://doi.org/10.1111/mec.15044
Dispersal of a nearshore marine fish connects marine reserves and adjacent fished areas along an open coast Baetscher, Diana S., Eric C. Anderson, Elizabeth A. Gilbert-Horvath, Daniel P. Malone, Emily T. Saarman, Mark H. Carr, and John Carlos Garza Molecular Ecology 28(7):1611-1623
2019Baetscher2
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Occurrence, fate, and confounding influence of ghost passive integrated transponder tags in an intensively monitored watershed

Bond, Rosealea M., Colin L. Nicol, Joseph D. Kiernan, and Brian C. Spence
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(2):286-298
https://doi.org/10.1139/cjfas-2017-0409
Occurrence, fate, and confounding influence of ghost passive integrated transponder tags in an intensively monitored watershed Bond, Rosealea M., Colin L. Nicol, Joseph D. Kiernan, and Brian C. Spence Canadian Journal of Fisheries and Aquatic Sciences 76(2):286-298
2019Bond
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Atlantic salmon (Salmo salar) climate scenario planning pilot report

Borggaard, D.L., D.M. Dick, J. Star, M. Alexander, M. Bernier, M. Collins, K. Damon-Randall, R. Dudley, R. Griffis, S. Hayes, M. Johnson, D. Kircheis, J. Kocik, B. Letcher, N. Mantua, W. Morrison, K. Nislow, V. Saba, R. Saunders, T. Sheehan, and M.D. Staudinger
2019
NOAA Fisheries, Greater Atlantic Region Policy Series 19-05 (89 p.)
Atlantic salmon (Salmo salar) climate scenario planning pilot report Borggaard, D.L., D.M. Dick, J. Star, M. Alexander, M. Bernier, M. Collins, K. Damon-Randall, R. Dudley, R. Griffis, S. Hayes, M. Johnson, D. Kircheis, J. Kocik, B. Letcher, N. Mantua, W. Morrison, K. Nislow, V. Saba, R. Saunders, T. Sheehan, and M.D. Staudinger NOAA Fisheries, Greater Atlantic Region Policy Series 19-05 (89 p.)
2019Borggaard
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Paulik revisited: Statistical framework and estimation performance of multistage recruitment functions

Brooks, Elizabeth N., James T. Thorson, Kyle W. Shertzer, Richard D.M. Nash, Jon K.T. Brodziak, Kelli F. Johnson, Nikolai Klibansky, Brian K. Wells, and Jonathan White
2019
Fisheries Research 217:58-70
https://doi.org/10.1016/j.fishres.2018.06.018
Paulik revisited: Statistical framework and estimation performance of multistage recruitment functions Brooks, Elizabeth N., James T. Thorson, Kyle W. Shertzer, Richard D.M. Nash, Jon K.T. Brodziak, Kelli F. Johnson, Nikolai Klibansky, Brian K. Wells, and Jonathan White Fisheries Research 217:58-70
2019Brooks
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Comparable spatial organization of pelagic fish schools and squid squadrons [abstract]

Burford, B.P., R. Williams, N. Demetras, J. Harding, and W.F. Gilly
2019
Integrative and Comparative Biology 59(supp.1):e27
https://doi.org/10.1093/icb/icz003
Comparable spatial organization of pelagic fish schools and squid squadrons [abstract] Burford, B.P., R. Williams, N. Demetras, J. Harding, and W.F. Gilly Integrative and Comparative Biology 59(supp.1):e27
2019Burford
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West Coast Deep-Sea Coral Initiative science plan (2018-2021)

Caldow, Chris, M. Elizabeth Clarke, Heather M. Coleman, Elizabeth Duncan, Meredith V. Everett, Tom F. Hourigan, Tom Laidig, Amanda N. Netburn, John H. Stadler, Jenny Waddell, and Arliss J. Winship (eds.)
2019
U.S. Department of Commerce, National Oceanic and Atmospheric Administration. 36 p.
West Coast Deep-Sea Coral Initiative science plan (2018-2021) Caldow, Chris, M. Elizabeth Clarke, Heather M. Coleman, Elizabeth Duncan, Meredith V. Everett, Tom F. Hourigan, Tom Laidig, Amanda N. Netburn, John H. Stadler, Jenny Waddell, and Arliss J. Winship (eds.) U.S. Department of Commerce, National Oceanic and Atmospheric Administration. 36 p.
2019Caldow
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Long-term conservation of Ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae

Campbell, Matthew A., Matthew C. Hale, Garrett J. McKinney, Krista M. Nichols, and Devon E. Pearse
2019
G3: Genes, Genomics, Genetics 9(6):2017-2028
https://doi.org/10.1534/g3.119.400070
Long-term conservation of Ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae Campbell, Matthew A., Matthew C. Hale, Garrett J. McKinney, Krista M. Nichols, and Devon E. Pearse G3: Genes, Genomics, Genetics 9(6):2017-2028
2019Campbell
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Marine vertebrate biodiversity and distribution within the central California Current using environmental DNA (eDNA) metabarcoding and ecosystem surveys

Closek, Collin J., Jarrod A. Santora, Hilary A. Starks, Isaac D. Schroeder, Elizabeth A. Andruszkiewicz, Keith M. Sakuma, Steven J. Bograd, Elliot L. Hazen, John C. Field, and Alexandria B. Boehm
2019
Frontiers in Marine Science 6:732 (17 p.)
https://doi.org/10.3389/fmars.2019.00732
Marine vertebrate biodiversity and distribution within the central California Current using environmental DNA (eDNA) metabarcoding and ecosystem surveys Closek, Collin J., Jarrod A. Santora, Hilary A. Starks, Isaac D. Schroeder, Elizabeth A. Andruszkiewicz, Keith M. Sakuma, Steven J. Bograd, Elliot L. Hazen, John C. Field, and Alexandria B. Boehm Frontiers in Marine Science 6:732 (17 p.)
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1
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1
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Movement and survival rates of Butte Creek spring-run Chinook salmon smolts from the Sutter Bypass to the Golden Gate Bridge in 2015, 2016, and 2017

Cordoleani, Flora, Jeremy Notch, Alex S. McHuron, Cyril J. Michel, and Arnold J. Ammann
2019
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-618. 47 p.
https://doi.org/10.25923/cwry-bx03
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2019Cordoleani
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0

Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem

Crozier, Lisa G., Michelle M. McClure, Tim Beechie, Steven J. Bograd, David A. Boughton, Mark Carr, Thomas D. Cooney, Jason B. Dunham, Correigh M. Greene, Melissa A. Haltuch, Elliott L. Hazen, Damon M. Holzer, David D. Huff, Rachel C. Johnson, Chris E. Jordan, Isaac C. Kaplan, Steven T. Lindley, Nathan J. Mantua, Peter B. Moyle, James M. Myers, Mark W. Nelson, Brian C. Spence, Laurie A. Weitkamp, Thomas H. Williams, and Ellen Willis-Norton
2019
PLoS ONE 14(7):e0217711 (49 p.)
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2019Crozier
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1
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1
0
0
0

Forecasting ENSO impacts on marine ecosystems of the US West Coast: A joint US CLIVAR and OCB workshop (August 10-11, 2016, San Diego, California)

Di Lorenzo, Emanuele, Art Miller, Clarissa Anderson, Kris Karnauskas, Julie Keister, Nate Mantua, Mark Ohman, and Aneesh Subramanian
2019
US Climate Variability & Predictability Program (Washington, DC) and Ocean Carbon & Biogeochemistry Program (Woods Hole Oceanographic Institution). 58 p.
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2019DiLorenzo
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0
1
0
0
0

Status of cowcod (Sebastes levis) in 2019

Dick, E.J., and Xi He
2019
Pacific Fishery Management Council, Portland, Oregon. 184 p.
Status of cowcod (Sebastes levis) in 2019 Dick, E.J., and Xi He Pacific Fishery Management Council, Portland, Oregon. 184 p.
2019Dick
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0
0
0
1
0
0
0

S4: A spatially continuous, individual-based model of salmonid redd superimposition

Dudley, Peter N.
2019
Transactions of the American Fisheries Society 148(2):352-372
https://doi.org/10.1002/tafs.10139
S4: A spatially continuous, individual-based model of salmonid redd superimposition Dudley, Peter N. Transactions of the American Fisheries Society 148(2):352-372
2019Dudley
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0
1
0
0
0

Insights from an individual based model of a fish population on a large regulated river

Dudley, Peter N.
2019
Environmental Biology of Fishes 102(8):1069-1095
https://doi.org/10.1007/s10641-019-00891-6
Insights from an individual based model of a fish population on a large regulated river Dudley, Peter N. Environmental Biology of Fishes 102(8):1069-1095
2019Dudley2
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0
0
1
0
0
0

Strontium isotopes reveal ephemeral streams used for spawning and rearing by an imperilled potamodromous cyprinid Clear Lake hitch Lavinia exilicauda chi

Feyrer, Frederick, George Whitman, Matthew Young, and Rachel C. Johnson
2019
Marine and Freshwater Research 70(12):1689-1697
https://doi.org/10.1071/MF18264
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2019Feyrer
0
0
0
0
1
0
0
0

Sablefish Stock Assessment Review (STAR) Panel report

Field, John, Jim Ianelli, Yong Chen, and Robin Cook
2019
Pacific Fishery Management Council, Portland, Oregon. 30 p.
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2019Field
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0
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1
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0
0

Modeling composite effects of marine and freshwater processes on migratory species

Friedman, Whitney R., Benjamin T. Martin, Brian K. Wells, Pete Warzybok, Cyril J. Michel, Eric M. Danner, and Steven T. Lindley
2019
Ecosphere 10(7):e02743 (21 p.)
https://doi.org/10.1002/ecs2.2743
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2019Friedman
0
0
0
0
1
0
0
0

A function-valued trait approach to estimating the genetic basis of size at age and its potential role in fisheries-induced evolution

Gao, Jin, and Stephan B. Munch
2019
Evolutionary Applications 12(5):964-976
https://doi.org/10.1111/eva.12771
A function-valued trait approach to estimating the genetic basis of size at age and its potential role in fisheries-induced evolution Gao, Jin, and Stephan B. Munch Evolutionary Applications 12(5):964-976
2019Gao
0
0
0
0
1
0
0
0

Stock assessment of the Longnose Skate (Beringraja rhina) in state and Federal waters off California, Oregon and Washington

Gertseva, Vladlena, Sean E. Matson, Ian Taylor, Joe Bizzarro, and John Wallace
2019
Pacific Fishery Management Council, Portland, Oregon. 238 p.
Stock assessment of the Longnose Skate (Beringraja rhina) in state and Federal waters off California, Oregon and Washington Gertseva, Vladlena, Sean E. Matson, Ian Taylor, Joe Bizzarro, and John Wallace Pacific Fishery Management Council, Portland, Oregon. 238 p.
2019Gertseva
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0
0
0
1
0
0
0

Social information drives ecological outcomes among competing species

Gil, M.A., M.L. Baskett, and S.J. Schreiber
2019
Ecology 100(11):e02835 (13 p.)
https://doi.org/10.1002/ecy.2835
Social information drives ecological outcomes among competing species Gil, M.A., M.L. Baskett, and S.J. Schreiber Ecology 100(11):e02835 (13 p.)
2019Gil
0
0
0
0
1
0
0
0

Range-wide populations of a long-distance migratory songbird converge during stopover in the tropics

Gomez, Camila, Sara L. Guerrero, Alyssa M. FitzGerald, Nicholas J. Bayly, Keith A. Hobson, and Carlos Daniel Cadena
2019
Ecological Monographs 89(2):e01349 (15 p.)
https://doi.org/10.1002/ecm.1349
Range-wide populations of a long-distance migratory songbird converge during stopover in the tropics Gomez, Camila, Sara L. Guerrero, Alyssa M. FitzGerald, Nicholas J. Bayly, Keith A. Hobson, and Carlos Daniel Cadena Ecological Monographs 89(2):e01349 (15 p.)
2019Gomez
0
0
0
0
1
0
0
0

Maternal diet and age alter direct and indirect relationships between life-history traits across multiple generations

Goos, Jared M., Cameron J. Swain, Stephan B. Munch, and Matthew R. Walsh
2019
Functional Ecology 33(3):491-502
https://doi.org/10.1111/1365-2435.13258
Maternal diet and age alter direct and indirect relationships between life-history traits across multiple generations Goos, Jared M., Cameron J. Swain, Stephan B. Munch, and Matthew R. Walsh Functional Ecology 33(3):491-502
2019Goos
0
0
0
0
1
0
0
0

Unraveling the recruitment problem: A review of environmentally-informed forecasting and management strategy evaluation

Haltuch, M.A., E.N. Brooks, J. Brodziak, J.A. Devine, K.F. Johnson, N. Klibansky, R.D.M. Nash, M.R. Payne, K.W. Shertzer, S. Subbey, and B.K. Wells
2019
Fisheries Research 217:198-216
https://doi.org/10.1016/j.fishres.2018.12.016
Unraveling the recruitment problem: A review of environmentally-informed forecasting and management strategy evaluation Haltuch, M.A., E.N. Brooks, J. Brodziak, J.A. Devine, K.F. Johnson, N. Klibansky, R.D.M. Nash, M.R. Payne, K.W. Shertzer, S. Subbey, and B.K. Wells Fisheries Research 217:198-216
2019Haltuch
0
0
0
0
1
0
0
0

Applying a simplified energy-budget model to explore the effects of temperature and food availability on the life history of green sturgeon (Acipenser medirostris)

Hamda, Natnael T., Benjamin Martin, Jamilynn B. Poletto, Dennis E. Cocherell, Nann A. Fangue, Joel Van Eenennaam, Ethan A. Mora, and Eric Danner
2019
Ecological Modelling 395:1-10
https://doi.org/10.1016/j.ecolmodel.2019.01.005
Applying a simplified energy-budget model to explore the effects of temperature and food availability on the life history of green sturgeon (Acipenser medirostris) Hamda, Natnael T., Benjamin Martin, Jamilynn B. Poletto, Dennis E. Cocherell, Nann A. Fangue, Joel Van Eenennaam, Ethan A. Mora, and Eric Danner Ecological Modelling 395:1-10
2019Hamda
0
0
0
0
1
0
0
0

Ocean acidification and hypoxia can have opposite effects on rockfish otolith growth

Hamilton, Scott L., Neosha S. Kashef, David M. Stafford, Evan G. Mattiasen, Lauren A. Kapphahn, Cheryl A. Logan, Eric P. Bjorkstedt, and Susan M. Sogard
2019
Journal of Experimental Marine Biology and Ecology 521:151245 (8 p.)
https://doi.org/10.1016/j.jembe.2019.151245
Ocean acidification and hypoxia can have opposite effects on rockfish otolith growth Hamilton, Scott L., Neosha S. Kashef, David M. Stafford, Evan G. Mattiasen, Lauren A. Kapphahn, Cheryl A. Logan, Eric P. Bjorkstedt, and Susan M. Sogard Journal of Experimental Marine Biology and Ecology 521:151245 (8 p.)
2019Hamilton
0
0
0
0
1
0
0
0

Sampling theory for the ecological and natural resource sciences

Hankin, David G., Michael S. Mohr, and Ken B. Newman
2019
Oxford University Press
Sampling theory for the ecological and natural resource sciences Hankin, David G., Michael S. Mohr, and Ken B. Newman Oxford University Press
2019Hankin
0
0
0
0
1
0
0
0

Physical controls on salmon redd site selection in restored reaches of a regulated, gravel-bed river

Harrison, Lee R., Erin Bray, Brandon Overstreet, Carl J. Legleiter, Rocko A. Brown, Joseph E. Merz, Rosealea M. Bond, Colin L. Nicol, and Thomas Dunne
2019
Water Resources Research 55(11):8942-8966
https://doi.org/10.1029/2018WR024428
Physical controls on salmon redd site selection in restored reaches of a regulated, gravel-bed river Harrison, Lee R., Erin Bray, Brandon Overstreet, Carl J. Legleiter, Rocko A. Brown, Joseph E. Merz, Rosealea M. Bond, Colin L. Nicol, and Thomas Dunne Water Resources Research 55(11):8942-8966
2019Harrison
0
0
0
0
1
0
0
0

Ecosystem status report of the California Current for 2019: A summary of ecosystem indicators compiled by the California Current Integrated Ecosystem Assessment Team (CCIEA)

Harvey, Chris, Newell Garfield, Gregory Williams, Nick Tolimieri, Isaac Schroeder, Kelly Andrews, Katie Barnas, Eric Bjorkstedt, Steven Bograd, Richard Brodeur, Brian Burke, Jason Cope, Audrey Coyne, Lynn deWitt, Judy Dowell, John Field, Jennifer Fisher, Peter Frey, Thomas Good, Correigh Greene, Elliott Hazen, Daniel Holland, Matthew Hunter, Kym Jacobson, Michael Jacox, Christy Juhasz, Isaac Kaplan, Stephen Kasperski, Dan Lawson, Andrew Leising, Alex Manderson, Sharon Melin, Stephanie Moore, Chery Morgan, Barbara Muhling, Stuart Munsch, Karma Norman, Roxanne Robertson, Laura Rogers-Bennett, Keith Sakuma, Jameal Samhouri, Rebecca Selden, Samantha Siedlecki, Kayleigh Somers, William Sydeman, Andrew Thompson, Jim Thorson, Desiree Tommasi, Vera Trainer, Anna Varney, Brian Wells, Curt Whitmire, Margaret Williams, Thomas Williams, Jeannette Zamon, and Samantha Zeman
2019
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-149. 87 p.
https://doi.org/10.25923/p0ed-ke21
Ecosystem status report of the California Current for 2019: A summary of ecosystem indicators compiled by the California Current Integrated Ecosystem Assessment Team (CCIEA) Harvey, Chris, Newell Garfield, Gregory Williams, Nick Tolimieri, Isaac Schroeder, Kelly Andrews, Katie Barnas, Eric Bjorkstedt, Steven Bograd, Richard Brodeur, Brian Burke, Jason Cope, Audrey Coyne, Lynn deWitt, Judy Dowell, John Field, Jennifer Fisher, Peter Frey, Thomas Good, Correigh Greene, Elliott Hazen, Daniel Holland, Matthew Hunter, Kym Jacobson, Michael Jacox, Christy Juhasz, Isaac Kaplan, Stephen Kasperski, Dan Lawson, Andrew Leising, Alex Manderson, Sharon Melin, Stephanie Moore, Chery Morgan, Barbara Muhling, Stuart Munsch, Karma Norman, Roxanne Robertson, Laura Rogers-Bennett, Keith Sakuma, Jameal Samhouri, Rebecca Selden, Samantha Siedlecki, Kayleigh Somers, William Sydeman, Andrew Thompson, Jim Thorson, Desiree Tommasi, Vera Trainer, Anna Varney, Brian Wells, Curt Whitmire, Margaret Williams, Thomas Williams, Jeannette Zamon, and Samantha Zeman U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-149. 87 p.
2019Harvey
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1
0
1
1
1
0

California Current Integrated Ecosystem Assessment (CCIEA): California Current Ecosystem status report, 2019

Harvey, Chris, Toby Garfield, Greg Williams, and Nick Tolimieri (eds.)
2019
A report of the NOAA CCIEA Team to the Pacific Fishery Management Council. 66 p.
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2019Harvey2
1
0
1
0
1
1
1
0

Competition or cooperation? Peer effects in the Pacific Coast groundfish fishery

Haskell, Nancy, Aaron Mamula, and Trevor C. Collier
2019
Land Economics 95(2):258-278
https://doi.org/10.3368/le.95.2.258
Competition or cooperation? Peer effects in the Pacific Coast groundfish fishery Haskell, Nancy, Aaron Mamula, and Trevor C. Collier Land Economics 95(2):258-278
2019Haskell
0
0
0
0
1
0
0
0

Effects of recruitment variability and fishing history on estimation of stock-recruitment relationships: Two case studies from U.S. West Coast fisheries

He, Xi, and John C. Field
2019
Fisheries Research 217:21-34
https://doi.org/10.1016/j.fishres.2018.06.001
Effects of recruitment variability and fishing history on estimation of stock-recruitment relationships: Two case studies from U.S. West Coast fisheries He, Xi, and John C. Field Fisheries Research 217:21-34
2019He
0
0
0
0
1
0
0
0

Structured priors for sparse probability vectors with application to model selection in Markov chains

Heiner, Matthew, Athanasios Kottas, and Stephan Munch
2019
Statistics and Computing 29(5):1077-1093
https://doi.org/10.1007/s11222-019-09856-2
Structured priors for sparse probability vectors with application to model selection in Markov chains Heiner, Matthew, Athanasios Kottas, and Stephan Munch Statistics and Computing 29(5):1077-1093
2019Heiner
0
0
0
0
1
0
0
0

Estimating spatial-temporal differences in Chinook salmon outmigration survival with habitat- and predation-related covariates

Henderson, Mark J., Ilysa S. Iglesias, Cyril J. Michel, Arnold J. Ammann, and David D. Huff
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(9):1549-1561
https://doi.org/10.1139/cjfas-2018-0212
Estimating spatial-temporal differences in Chinook salmon outmigration survival with habitat- and predation-related covariates Henderson, Mark J., Ilysa S. Iglesias, Cyril J. Michel, Arnold J. Ammann, and David D. Huff Canadian Journal of Fisheries and Aquatic Sciences 76(9):1549-1561
2019Henderson2
0
0
0
0
1
0
0
0

Spatial variability in ocean-mediated growth potential is linked to Chinook salmon survival

Henderson, Mark, Jerome Fiechter, David D. Huff, and Brian K. Wells
2019
Fisheries Oceanography 28(3):334-344
https://doi.org/10.1111/fog.12415
Spatial variability in ocean-mediated growth potential is linked to Chinook salmon survival Henderson, Mark, Jerome Fiechter, David D. Huff, and Brian K. Wells Fisheries Oceanography 28(3):334-344
2019Henderson
0
0
0
0
1
0
0
0

Model description for the Sacramento River winter-run Chinook salmon life cycle model

Hendrix, Noble, Ann-Marie K. Osterback, Eva Jennings, Eric Danner, Vamsi Sridharan, Correigh M. Greene, and Steven T. Lindley
2019
QEDA Consulting, Seattle, Washington. 45 p.
Model description for the Sacramento River winter-run Chinook salmon life cycle model Hendrix, Noble, Ann-Marie K. Osterback, Eva Jennings, Eric Danner, Vamsi Sridharan, Correigh M. Greene, and Steven T. Lindley QEDA Consulting, Seattle, Washington. 45 p.
2019Hendrix
0
0
0
0
1
0
0
0

An exploration of factors that relate to the occurrence of multiple brooding in rockfishes (Sebastes spp.)

Holder, Anna M., and John C. Field
2019
Fishery Bulletin 117(3):180-188
https://doi.org/10.7755/FB.117.3.5
An exploration of factors that relate to the occurrence of multiple brooding in rockfishes (Sebastes spp.) Holder, Anna M., and John C. Field Fishery Bulletin 117(3):180-188
2019Holder
0
0
0
0
1
0
0
0

Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2019 season

Klamath River Technical Team
2019
Klamath River Technical Team. 31 p.
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2019Klamath1
0
0
0
0
1
0
0
0

Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2018 run

Klamath River Technical Team
2019
Klamath River Technical Team. 21 p.
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2019Klamath2
0
0
0
0
1
0
0
0

Resource abundance, fisheries management, and fishing ports: The U.S. Atlantic sea scallop fishery

Lee, Min-Yang, Sharon Benjamin, Andrew Carr-Harris, Deborah Hart, and Cameron Speir
2019
Agricultural and Resource Economics Review 48(1):71-99
https://doi.org/10.1017/age.2018.23
Resource abundance, fisheries management, and fishing ports: The U.S. Atlantic sea scallop fishery Lee, Min-Yang, Sharon Benjamin, Andrew Carr-Harris, Deborah Hart, and Cameron Speir Agricultural and Resource Economics Review 48(1):71-99
2019Lee
0
0
0
0
1
0
0
0

Reproductive ecology and size-dependent fecundity in the petrale sole (Eopsetta jordani) in waters off California, Oregon, and Washington

Lefebvre, Lyndsey S., Cherisa L. Friedlander, and John C. Field
2019
Fishery Bulletin 117(4):291-302
https://doi.org/10.7755/FB.117.4.2
Reproductive ecology and size-dependent fecundity in the petrale sole (Eopsetta jordani) in waters off California, Oregon, and Washington Lefebvre, Lyndsey S., Cherisa L. Friedlander, and John C. Field Fishery Bulletin 117(4):291-302
2019Lefebvre
0
0
0
0
1
0
0
0

Remote sensing of river bathymetry: Evaluating a range of sensors, platforms, and algorithms on the upper Sacramento River, California, USA

Legleiter, Carl J., and Lee R. Harrison
2019
Water Resources Research 55(3):2142-2169
https://doi.org/10.1029/2018WR023586
Remote sensing of river bathymetry: Evaluating a range of sensors, platforms, and algorithms on the upper Sacramento River, California, USA Legleiter, Carl J., and Lee R. Harrison Water Resources Research 55(3):2142-2169
2019Legleiter
0
0
0
0
1
0
0
0

Where predators and prey meet: Anthropogenic contact points between fishes in a freshwater estuary

Lehman, Brendan M., Meagan P. Gary, Nicholas J. Demetras, and Cyril J. Michel
2019
San Francisco Estuary and Watershed Science 17(4):3 (19 p.)
https://doi.org/10.15447/sfews.2019v17iss4art3
Where predators and prey meet: Anthropogenic contact points between fishes in a freshwater estuary Lehman, Brendan M., Meagan P. Gary, Nicholas J. Demetras, and Cyril J. Michel San Francisco Estuary and Watershed Science 17(4):3 (19 p.)
2019Lehman
0
0
0
0
1
0
0
0

Community Sustainability Cooperatives in Central California: Continued fishery participation through quota share holdings in the Pacific Coast groundfish fishery

Mamula, Aaron, and Rosemary Kosaka
2019
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-620. 70 p.
https://doi.org/10.25923/m14m-m591
Community Sustainability Cooperatives in Central California: Continued fishery participation through quota share holdings in the Pacific Coast groundfish fishery Mamula, Aaron, and Rosemary Kosaka U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-620. 70 p.
2019Mamula
1
0
0
0
1
0
0
0

West Coast Fishing Communities Socio-Economic Data Model: technical documentation and guidelines for use

Mamula, Aaron, Camille Kohler, Rosemary Kosaka, Anna Varney, and Karma Norman
2019
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-621. 140 p.
https://doi.org/10.25923/8g05-v821
West Coast Fishing Communities Socio-Economic Data Model: technical documentation and guidelines for use Mamula, Aaron, Camille Kohler, Rosemary Kosaka, Anna Varney, and Karma Norman U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-621. 140 p.
2019Mamula2
1
0
0
0
1
0
0
0

Decoupling outmigration from marine survival indicates outsized influence of streamflow on cohort success for California's Chinook salmon populations

Michel, Cyril J.
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(8):1398-1410
https://doi.org/10.1139/cjfas-2018-0140
Decoupling outmigration from marine survival indicates outsized influence of streamflow on cohort success for California's Chinook salmon populations Michel, Cyril J. Canadian Journal of Fisheries and Aquatic Sciences 76(8):1398-1410
2019Michel
0
0
0
0
1
0
0
0

Linking predation mortality to predator density and survival for out-migrating Chinook Salmon and Steelhead in the lower San Joaquin River and South Delta

Michel, Cyril J., Christopher M. Loomis, Mark J. Henderson, Joseph M. Smith, Nicholas J. Demetras, Ilysa S. Iglesias, Brendan M. Lehman, and David D. Huff
2019
Report to the California Department of Fish and Wildlife, Contract E1696020. U.S. National Oceanic and Atmospheric Administration, Southwest Fisheries Science Center, Santa Cruz, California. 58 p.
Linking predation mortality to predator density and survival for out-migrating Chinook Salmon and Steelhead in the lower San Joaquin River and South Delta Michel, Cyril J., Christopher M. Loomis, Mark J. Henderson, Joseph M. Smith, Nicholas J. Demetras, Ilysa S. Iglesias, Brendan M. Lehman, and David D. Huff Report to the California Department of Fish and Wildlife, Contract E1696020. U.S. National Oceanic and Atmospheric Administration, Southwest Fisheries Science Center, Santa Cruz, California. 58 p.
2019Michel2
0
0
0
0
1
0
0
0

Distribution of pelagic thaliaceans, Thetys vagina and Pyrosoma atlanticum, during a period of mass occurrence within the California Current

Miller, Rebecca R., Jarrod A. Santora, Toby D. Auth, Keith M. Sakuma, Brian K. Wells, John C. Field, and Richard D. Brodeur
2019
CalCOFI Reports 60:94-108
Distribution of pelagic thaliaceans, Thetys vagina and Pyrosoma atlanticum, during a period of mass occurrence within the California Current Miller, Rebecca R., Jarrod A. Santora, Toby D. Auth, Keith M. Sakuma, Brian K. Wells, John C. Field, and Richard D. Brodeur CalCOFI Reports 60:94-108
2019Miller2
0
0
0
0
1
0
0
0

NMFS Southwest Fisheries Science Center: Agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee

Monk, Melissa (ed.), John Field, Tom Laidig, Nick Wegner, and William Watson
2019
In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 60th annual meeting of the TSC (April 23-24, 2019, Olympia, Washington), p. 341-354. Pacific States Marine Fisheries Commission.
NMFS Southwest Fisheries Science Center: Agency report to the Technical Subcommittee of the Canada-U.S. Groundfish Committee Monk, Melissa (ed.), John Field, Tom Laidig, Nick Wegner, and William Watson In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 60th annual meeting of the TSC (April 23-24, 2019, Olympia, Washington), p. 341-354. Pacific States Marine Fisheries Commission.
2019Monk2
0
0
0
0
1
1
0
0

The combined status of gopher (Sebastes carnatus) and black-and-yellow rockfishes (Sebastes chrysomelas) in U.S. waters off California in 2019

Monk, Melissa H., and Xi He
2019
Pacific Fishery Management Council, Portland, Oregon. 200 p.
The combined status of gopher (Sebastes carnatus) and black-and-yellow rockfishes (Sebastes chrysomelas) in U.S. waters off California in 2019 Monk, Melissa H., and Xi He Pacific Fishery Management Council, Portland, Oregon. 200 p.
2019Monk
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Bayesian inference from the conditional genetic stock identification model

Moran, Benjamin M., and Eric C. Anderson
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(4):551-560
https://doi.org/10.1139/cjfas-2018-0016
Bayesian inference from the conditional genetic stock identification model Moran, Benjamin M., and Eric C. Anderson Canadian Journal of Fisheries and Aquatic Sciences 76(4):551-560
2019Moran
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Warm, dry winters truncate timing and size distribution of seaward-migrating salmon across a large, regulated watershed

Munsch, Stuart H., Correigh M. Greene, Rachel C. Johnson, William H. Satterthwaite, Hiroo Imaki, and Patricia L. Brandes
2019
Ecological Applications 29(4):e01880 (14 p.)
https://doi.org/10.1002/eap.1880
Warm, dry winters truncate timing and size distribution of seaward-migrating salmon across a large, regulated watershed Munsch, Stuart H., Correigh M. Greene, Rachel C. Johnson, William H. Satterthwaite, Hiroo Imaki, and Patricia L. Brandes Ecological Applications 29(4):e01880 (14 p.)
2019Munsch
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1
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Carmel River steelhead fishery report - 2019

Ohms, Haley A., and David A. Boughton
2019
Prepared for California-American Water Company in fulfillment of the Memorandum of Agreement SWC-156. NOAA Fisheries, Southwest Fisheries Science Center, Santa Cruz, California. 44 p.
Carmel River steelhead fishery report - 2019 Ohms, Haley A., and David A. Boughton Prepared for California-American Water Company in fulfillment of the Memorandum of Agreement SWC-156. NOAA Fisheries, Southwest Fisheries Science Center, Santa Cruz, California. 44 p.
2019Ohms
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Review of 2018 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan

Pacific Fishery Management Council (Salmon Technical Team)
2019
Pacific Fishery Management Council, Portland, Oregon. 339 p.
Review of 2018 ocean salmon fisheries: Stock assessment and fishery evaluation document for the Pacific Coast Salmon Fishery Management Plan Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 339 p.
2019Pacific1
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Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2019 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2019
Pacific Fishery Management Council, Portland, Oregon. 127 p.
Preseason report I: Stock abundance analysis and environmental assessment Part 1 for 2019 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 127 p.
2019Pacific2
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1
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Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2019 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2019
Pacific Fishery Management Council, Portland, Oregon. 68 p.
Preseason report II: Proposed alternatives and environmental assessment Part 2 for 2019 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 68 p.
2019Pacific3
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1
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Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2019 ocean salmon fishery regulations

Pacific Fishery Management Council (Salmon Technical Team)
2019
Pacific Fishery Management Council, Portland, Oregon. 47 p.
Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2019 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 47 p.
2019Pacific4
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1
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Sex-dependent dominance maintains migration supergene in rainbow trout

Pearse, Devon E., Nicola J. Barson, Torfinn Nome, Guangtu Gao, Matthew A. Campbell, Alicia Abadia-Cardoso, Eric C. Anderson, David E. Rundio, Thomas H. Williams, Kerry A. Naish, Thomas Moen, Sixin Liu, Matthew Kent, Michel Moser, David R. Minkley, Eric B. Rondeau, Marine S.O. Brieuc, Simen Rod Sandve, Michael R. Miller, Lucydalila Cedillo, Kobi Baruch, Alvara G. Hernandez, Gil Ben-Zvi, Doron Shem-Tov, Omer Barad, Kirill Kuzishchin, John Carlos Garza, Steven T. Lindley, Ben F. Koop, Gary H. Thorgaard, Yniv Palti, and Sigbjorn Lien
2019
Nature Ecology and Evolution 3(12):1731-1742
https://doi.org/10.1038/s41559-019-1044-6
Sex-dependent dominance maintains migration supergene in rainbow trout Pearse, Devon E., Nicola J. Barson, Torfinn Nome, Guangtu Gao, Matthew A. Campbell, Alicia Abadia-Cardoso, Eric C. Anderson, David E. Rundio, Thomas H. Williams, Kerry A. Naish, Thomas Moen, Sixin Liu, Matthew Kent, Michel Moser, David R. Minkley, Eric B. Rondeau, Marine S.O. Brieuc, Simen Rod Sandve, Michael R. Miller, Lucydalila Cedillo, Kobi Baruch, Alvara G. Hernandez, Gil Ben-Zvi, Doron Shem-Tov, Omer Barad, Kirill Kuzishchin, John Carlos Garza, Steven T. Lindley, Ben F. Koop, Gary H. Thorgaard, Yniv Palti, and Sigbjorn Lien Nature Ecology and Evolution 3(12):1731-1742
2019Pearse
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1
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0

The intrinsic predictability of ecological time series and its potential to guide forecasting

Pennekamp, Frank, Alison C. Iles, Joshua Garland, Georgina Brennan, Ulrich Brose, Ursula Gaedke, Ute Jacob, Pavel Kratina, Blake Matthews, Stephan Munch, Mark Novak, Gian Marco Palamara, Bjorn C. Rall, Benjamin Rosenbaum, Andrea Tabi, Colette Ward, Richard Williams, Hao Ye, and Owen L. Petchey
2019
Ecological Monographs 89(2):e01359 (17 p.)
https://doi.org/10.1002/ecm.1359
The intrinsic predictability of ecological time series and its potential to guide forecasting Pennekamp, Frank, Alison C. Iles, Joshua Garland, Georgina Brennan, Ulrich Brose, Ursula Gaedke, Ute Jacob, Pavel Kratina, Blake Matthews, Stephan Munch, Mark Novak, Gian Marco Palamara, Bjorn C. Rall, Benjamin Rosenbaum, Andrea Tabi, Colette Ward, Richard Williams, Hao Ye, and Owen L. Petchey Ecological Monographs 89(2):e01359 (17 p.)
2019Pennekamp
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1
0
0
0

Diet variability of steelhead/Rainbow Trout in a coastal basin in central California: relative importance of seasonal, spatial, and ontogenetic variation

Rundio, David E., and Steven T. Lindley
2019
Transactions of the American Fisheries Society 148(1):88-105
https://doi.org/10.1002/tafs.10121
Diet variability of steelhead/Rainbow Trout in a coastal basin in central California: relative importance of seasonal, spatial, and ontogenetic variation Rundio, David E., and Steven T. Lindley Transactions of the American Fisheries Society 148(1):88-105
2019Rundio
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1
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Seasonal movement patterns of striped bass (Morone saxatilis) in their nonnative range

Sabal, Megan C., Cyril J. Michel, Joseph M. Smith, Andrew Hampton, and Sean A. Hayes
2019
Estuaries and Coasts 42(2):567-579
https://doi.org/10.1007/s12237-018-0467-7
Seasonal movement patterns of striped bass (Morone saxatilis) in their nonnative range Sabal, Megan C., Cyril J. Michel, Joseph M. Smith, Andrew Hampton, and Sean A. Hayes Estuaries and Coasts 42(2):567-579
2019Sabal
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0
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1
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0
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Cruise report, NOAA Ship Reuben Lasker RL-19-03, May 5 - June 7, 2019: Rockfish recruitment and ecosystem assessment

Sakuma, Keith
2019
NOAA National Marine Fisheries Service, SWFSC Fisheries Ecology Division, Santa Cruz, California. 19 p.
Cruise report, NOAA Ship Reuben Lasker RL-19-03, May 5 - June 7, 2019: Rockfish recruitment and ecosystem assessment Sakuma, Keith NOAA National Marine Fisheries Service, SWFSC Fisheries Ecology Division, Santa Cruz, California. 19 p.
2019Sakuma
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0
1
0
0
0

Trait variation in extreme thermal environments under constant and fluctuating temperatures

Salinas, Santiago, Shannon E. Irvine, Claire L. Schertzing, Shelby Q. Golden, and Stephan B. Munch
2019
Philosophical Transactions of the Royal Society B 374(1768):20180177 (9 p.)
https://doi.org/10.1098/rstb.2018.0177
Trait variation in extreme thermal environments under constant and fluctuating temperatures Salinas, Santiago, Shannon E. Irvine, Claire L. Schertzing, Shelby Q. Golden, and Stephan B. Munch Philosophical Transactions of the Royal Society B 374(1768):20180177 (9 p.)
2019Salinas
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An ecosystem-based risk assessment for California fisheries co-developed by scientists, managers, and stakeholders

Samhouri, Jameal F., Errin Ramanujam, Joseph J. Bizzarro, Hayley Carter, Kelly Sayce, and Sara Shen
2019
Biological Conservation 231:103-121
https://doi.org/10.1016/j.biocon.2018.12.027
An ecosystem-based risk assessment for California fisheries co-developed by scientists, managers, and stakeholders Samhouri, Jameal F., Errin Ramanujam, Joseph J. Bizzarro, Hayley Carter, Kelly Sayce, and Sara Shen Biological Conservation 231:103-121
2019Samhouri
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1
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Patterns of synchrony and environmental thresholds in the performance of forecast models used for U.S. West Coast Chinook and coho salmon stocks

Satterthwaite, William H., Kelly S. Andrews, Jennifer L. Gosselin, Correigh M. Greene, Chris J. Harvey, Mary Hunsicker, Stuart H. Munsch, and Jameal F. Samhouri
2019
In: Jeongseok Park and Laura Tessier (eds.), Second NPAFC-IYS Workshop on Salmon Ocean Ecology in a Changing Climate (Portland, Oregon, USA, May 18-20, 2019). North Pacific Anadromous Fish Commission, Technical Report 15:157-160
https://doi.org/10.23849/npafctr15/157.160.
Patterns of synchrony and environmental thresholds in the performance of forecast models used for U.S. West Coast Chinook and coho salmon stocks Satterthwaite, William H., Kelly S. Andrews, Jennifer L. Gosselin, Correigh M. Greene, Chris J. Harvey, Mary Hunsicker, Stuart H. Munsch, and Jameal F. Samhouri In: Jeongseok Park and Laura Tessier (eds.), Second NPAFC-IYS Workshop on Salmon Ocean Ecology in a Changing Climate (Portland, Oregon, USA, May 18-20, 2019). North Pacific Anadromous Fish Commission, Technical Report 15:157-160
2019Satterthwaite
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Source water variability as a driver of rockfish recruitment in the California Current Ecosystem: implications for climate change and fisheries management

Schroeder, Isaac D., Jarrod A. Santora, Steven J. Bograd, Elliott L. Hazen, Keith M. Sakuma, Andrew M. Moore, Christopher A. Edwards, Brian K. Wells, and John C. Field
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(6):950-960
https://doi.org/10.1139/cjfas-2017-0480
Source water variability as a driver of rockfish recruitment in the California Current Ecosystem: implications for climate change and fisheries management Schroeder, Isaac D., Jarrod A. Santora, Steven J. Bograd, Elliott L. Hazen, Keith M. Sakuma, Andrew M. Moore, Christopher A. Edwards, Brian K. Wells, and John C. Field Canadian Journal of Fisheries and Aquatic Sciences 76(6):950-960
2019Schroeder
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1
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A novel integrative approach elucidates fine-scale dispersal patchiness in marine populations

Schunter, C., M. Pascual, N. Raventos, J. Garriga, J.C. Garza, F. Bartumeus, and E. Macpherson
2019
Scientific Reports 9:10796 (10 p.)
https://doi.org/10.1038/s41598-019-47200-w
A novel integrative approach elucidates fine-scale dispersal patchiness in marine populations Schunter, C., M. Pascual, N. Raventos, J. Garriga, J.C. Garza, F. Bartumeus, and E. Macpherson Scientific Reports 9:10796 (10 p.)
2019Schunter
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Using hierarchical models to estimate stock-specific and seasonal variation in ocean distribution, survivorship, and aggregate abundance of fall run Chinook salmon

Shelton, Andrew Olaf, William H. Satterthwaite, Eric J. Ward, Blake E. Feist, and Brian Burke
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(1):95-108
https://doi.org/10.1139/cjfas-2017-0204
Using hierarchical models to estimate stock-specific and seasonal variation in ocean distribution, survivorship, and aggregate abundance of fall run Chinook salmon Shelton, Andrew Olaf, William H. Satterthwaite, Eric J. Ward, Blake E. Feist, and Brian Burke Canadian Journal of Fisheries and Aquatic Sciences 76(1):95-108
2019Shelton
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1
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Interpreting early species range descriptions for Pacific salmon, Oncorhynchus spp., in coastal California watersheds: the historical context

Spence, Brian C.
2019
Marine Fisheries Review 81(1):1-39
https://doi.org/10.7755/MFR.81.1.1
Interpreting early species range descriptions for Pacific salmon, Oncorhynchus spp., in coastal California watersheds: the historical context Spence, Brian C. Marine Fisheries Review 81(1):1-39
2019Spence
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1
0
0
0

Analytical solution of advection-dispersion boundary value processes in environmental flows

Sridharan, Vamsi Krishna, and Andrew M. Hein
2019
Water Resources Research 55(12):10130-10143
https://doi.org/10.1029/2019WR025429
Analytical solution of advection-dispersion boundary value processes in environmental flows Sridharan, Vamsi Krishna, and Andrew M. Hein Water Resources Research 55(12):10130-10143
2019Sridharan
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1
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0
0

Acoustic influence of underwater mobile survey vehicles on the soundscape of Pacific rockfish habitat

Stimpert, Alison K., Brijonnay C. Madrigal, W. Waldo Wakefield, and Mary M. Yoklavich
2019
Journal of the Acoustical Society of America 146(1):EL45-EL51
https://doi.org/10.1121/1.5109914
Acoustic influence of underwater mobile survey vehicles on the soundscape of Pacific rockfish habitat Stimpert, Alison K., Brijonnay C. Madrigal, W. Waldo Wakefield, and Mary M. Yoklavich Journal of the Acoustical Society of America 146(1):EL45-EL51
2019Stimpert
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