Division: Fisheries Ecology Division
Effects of species invasion on population dynamics, vital rates and life histories of the native species
Vincenzi, Simone, Alain J. Crivelli, Dusan Jesensek, Ellen Campbell, and John C. Garza
2019
Population Ecology 61(1):25-34
Effects of species invasion on population dynamics, vital rates and life histories of the native species Vincenzi, Simone, Alain J. Crivelli, Dusan Jesensek, Ellen Campbell, and John C. Garza Population Ecology 61(1):25-34
2019Vincenzi
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Effect of a mammal excluder device on trawl catches of salmon and other pelagic animals
Wainwright, Thomas C., Robert L. Emmett, Laurie A. Weitkamp, Sean A. Hayes, Paul J. Bentley, and Jeffrey A. Harding
2019
Marine and Coastal Fisheries 11(1):17-31
Effect of a mammal excluder device on trawl catches of salmon and other pelagic animals Wainwright, Thomas C., Robert L. Emmett, Laurie A. Weitkamp, Sean A. Hayes, Paul J. Bentley, and Jeffrey A. Harding Marine and Coastal Fisheries 11(1):17-31
2019Wainwright
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Development and evaluation of SNP panels for the detection of hybridization between wild and escaped Atlantic salmon (Salmo salar) in the western Atlantic
Wringe, Brendan F., Eric C. Anderson, Nicholas W. Jeffery, Ryan R.E. Stanley, and Ian R. Bradbury
2019
Canadian Journal of Fisheries and Aquatic Sciences 76(5):695-704
Development and evaluation of SNP panels for the detection of hybridization between wild and escaped Atlantic salmon (Salmo salar) in the western Atlantic Wringe, Brendan F., Eric C. Anderson, Nicholas W. Jeffery, Ryan R.E. Stanley, and Ian R. Bradbury Canadian Journal of Fisheries and Aquatic Sciences 76(5):695-704
2019Wringe
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Managing hydropower dam releases for water users and imperiled fishes with contrasting thermal habitat requirements
Zarri, Liam J., Eric M. Danner, Miles E. Daniels, and Eric P. Palkovacs
2019
Journal of Applied Ecology 56(11):2423-2430
Managing hydropower dam releases for water users and imperiled fishes with contrasting thermal habitat requirements Zarri, Liam J., Eric M. Danner, Miles E. Daniels, and Eric P. Palkovacs Journal of Applied Ecology 56(11):2423-2430
2019Zarri
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Ecosystem-based management affecting Brandt's Cormorant resources and populations in the central California Current region
Ainley, David G., Jarrod A. Santora, Phillip J. Capitolo, John C. Field, Jessie N. Beck, Ryan D. Carle, Erica Donnelly-Greenan, Gerard J. McChesney, Meredith Elliott, Russell W. Bradley, Kirsten Lindquist, Peter Nelson, Jan Roletto, Peter Warzybok, Michelle Hester, and Jaime Jahncke
2018
Biological Conservation 217:407-418
Ecosystem-based management affecting Brandt's Cormorant resources and populations in the central California Current region Ainley, David G., Jarrod A. Santora, Phillip J. Capitolo, John C. Field, Jessie N. Beck, Ryan D. Carle, Erica Donnelly-Greenan, Gerard J. McChesney, Meredith Elliott, Russell W. Bradley, Kirsten Lindquist, Peter Nelson, Jan Roletto, Peter Warzybok, Michelle Hester, and Jaime Jahncke Biological Conservation 217:407-418
2018Ainley
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Microhaplotypes provide increased power from short-read DNA sequences for relationship inference
Baetscher, Diana S., Anthony J. Clemento, Thomas C. Ng, Eric C. Anderson, and John Carlos Garza
2018
Molecular Ecology Resources 18(2):296-305
Microhaplotypes provide increased power from short-read DNA sequences for relationship inference Baetscher, Diana S., Anthony J. Clemento, Thomas C. Ng, Eric C. Anderson, and John Carlos Garza Molecular Ecology Resources 18(2):296-305
2018Baetscher
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Wildfire severity, anadromous at-risk fish, and food webs in a California coastal stream
Beakes, Michael P., and Sean A. Hayes
2018
In: Jan W. Van Wagtendonk et al. (eds.), Fire in California's ecosystems (2nd ed.), Chapter 25: Fire and at-risk species, Sidebar 25.1, p. 481-482. University of California Press.
Wildfire severity, anadromous at-risk fish, and food webs in a California coastal stream Beakes, Michael P., and Sean A. Hayes In: Jan W. Van Wagtendonk et al. (eds.), Fire in California's ecosystems (2nd ed.), Chapter 25: Fire and at-risk species, Sidebar 25.1, p. 481-482. University of California Press.
2018Beakes
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Carmel River steelhead fishery report - 2018
Boughton, David A., and Haley A. Ohms
2018
Prepared for California-American Water Company in fulfillment of the Memorandum of Agreement SWC-156. NOAA Fisheries, Southwest Fisheries Science Center, Santa Cruz, California. 56 p.
Carmel River steelhead fishery report - 2018 Boughton, David A., and Haley A. Ohms Prepared for California-American Water Company in fulfillment of the Memorandum of Agreement SWC-156. NOAA Fisheries, Southwest Fisheries Science Center, Santa Cruz, California. 56 p.
2018Boughton2
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On the capacity of upper Tuolumne and Merced Rivers for reintroduction of steelhead and spring-run Chinook salmon
Boughton, David A., Sara John, Carl J. Legleiter, Ryan Richardson, and Lee R. Harrison
2018
NOAA Southwest Fisheries Science Center, Santa Cruz, California. 72 p.
On the capacity of upper Tuolumne and Merced Rivers for reintroduction of steelhead and spring-run Chinook salmon Boughton, David A., Sara John, Carl J. Legleiter, Ryan Richardson, and Lee R. Harrison NOAA Southwest Fisheries Science Center, Santa Cruz, California. 72 p.
2018Boughton
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Genotyping-by-sequencing of genome-wide microsatellite loci reveals fine-scale harvest composition in a coastal Atlantic salmon fishery
Bradbury, Ian R., Brendan F. Wringe, Beth Watson, Ian Paterson, John Horne, Robert Beiko, Sarah J. Lehnert, Marie Clement, Eric C. Anderson, Nicholas W. Jeffery, Steven Duffy, Emma Sylvester, Martha Robertson, and Paul Bentzen
2018
Evolutionary Applications 11(6):918-930
Genotyping-by-sequencing of genome-wide microsatellite loci reveals fine-scale harvest composition in a coastal Atlantic salmon fishery Bradbury, Ian R., Brendan F. Wringe, Beth Watson, Ian Paterson, John Horne, Robert Beiko, Sarah J. Lehnert, Marie Clement, Eric C. Anderson, Nicholas W. Jeffery, Steven Duffy, Emma Sylvester, Martha Robertson, and Paul Bentzen Evolutionary Applications 11(6):918-930
2018Bradbury
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An unusual gelatinous plankton event in the NE Pacific: The Great Pyrosome Bloom of 2017
Brodeur, Richard, Ian Perry, Jennifer Boldt, Linnea Flostrand, Moira Galbraith, Jacquelynne King, James Murphy, Keith Sakuma, and Andrew Thompson
2018
PICES Press 26(1):22-27
An unusual gelatinous plankton event in the NE Pacific: The Great Pyrosome Bloom of 2017 Brodeur, Richard, Ian Perry, Jennifer Boldt, Linnea Flostrand, Moira Galbraith, Jacquelynne King, James Murphy, Keith Sakuma, and Andrew Thompson PICES Press 26(1):22-27
2018Brodeur
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Deep-sea Coral Research and Technology Program: Workshop report for the DSCRTP West Coast Research Initiative 2018-2021 (16-17 April 2018, CINMS Office, Santa Barbara, California)
Caldow, Chris, M. Elizabeth Clarke, Heather Coleman, Elizabeth Duncan, Meredith V. Everett, Tom F. Hourigan, Tom E. Laidig, Amanda N. Netburn, John H. Stadler, Jenny Waddell, and Arliss J. Winship (eds.)
2018
NOAA Deep Sea Coral Research and Technology Program. 43 p.
Deep-sea Coral Research and Technology Program: Workshop report for the DSCRTP West Coast Research Initiative 2018-2021 (16-17 April 2018, CINMS Office, Santa Barbara, California) Caldow, Chris, M. Elizabeth Clarke, Heather Coleman, Elizabeth Duncan, Meredith V. Everett, Tom F. Hourigan, Tom E. Laidig, Amanda N. Netburn, John H. Stadler, Jenny Waddell, and Arliss J. Winship (eds.) NOAA Deep Sea Coral Research and Technology Program. 43 p.
2018Caldow
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Multilocus phylogenetic analysis of the first molecular data from the rare and monotypic Amarsipidae places the family within the Pelagia and highlights limitations of existing data sets in resolving pelagian interrelationships
Campbell, Matthew A., Tetsuya Sado, Chuya Shinzato, Ryo Koyanagi, Makoto Okamoto, and Masaki Miya
2018
Molecular Phylogenetics and Evolution 124:172-180
Multilocus phylogenetic analysis of the first molecular data from the rare and monotypic Amarsipidae places the family within the Pelagia and highlights limitations of existing data sets in resolving pelagian interrelationships Campbell, Matthew A., Tetsuya Sado, Chuya Shinzato, Ryo Koyanagi, Makoto Okamoto, and Masaki Miya Molecular Phylogenetics and Evolution 124:172-180
2018Campbell
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Bridging the spawner-recruit disconnect: trends in American lobster recruitment linked to the pelagic food web
Carloni, Joshua T., Richard Wahle, Paul Geoghegan, and Eric Bjorkstedt
2018
Bulletin of Marine Science 94(3):719-735
Bridging the spawner-recruit disconnect: trends in American lobster recruitment linked to the pelagic food web Carloni, Joshua T., Richard Wahle, Paul Geoghegan, and Eric Bjorkstedt Bulletin of Marine Science 94(3):719-735
2018Carloni
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Movement and survival of wild Chinook Salmon smolts from Butte Creek during their out-migration to the ocean: comparison of a dry year versus a wet year
Cordoleani, Flora, Jeremy Notch, Alex S. McHuron, Arnold J. Ammann, and Cyril J. Michel
2018
Transactions of the American Fisheries Society 147(1):171-184
Movement and survival of wild Chinook Salmon smolts from Butte Creek during their out-migration to the ocean: comparison of a dry year versus a wet year Cordoleani, Flora, Jeremy Notch, Alex S. McHuron, Arnold J. Ammann, and Cyril J. Michel Transactions of the American Fisheries Society 147(1):171-184
2018Cordoleani
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Atlantic salmon mortality at sea: Developing an evidence-based "Likely Suspects" Framework
Crozier, Walter, Ken Whelan, Mathieu Buoro, Gerald Chaput, Jason Daniels, Sue Grant, Kim Hyatt, James Irvine, Niall O'Maoileidigh, Etiennne Prevost, Etienne Rivot, Ian Russell, Michael Schmidt, and Brian Wells
2018
Based on a workshop by the Atlantic Salmon Trust (Edinburgh, 6-8 November 2017). Atlantic Salmon Trust, Edinburgh. 72 p.
Atlantic salmon mortality at sea: Developing an evidence-based "Likely Suspects" Framework Crozier, Walter, Ken Whelan, Mathieu Buoro, Gerald Chaput, Jason Daniels, Sue Grant, Kim Hyatt, James Irvine, Niall O'Maoileidigh, Etiennne Prevost, Etienne Rivot, Ian Russell, Michael Schmidt, and Brian Wells Based on a workshop by the Atlantic Salmon Trust (Edinburgh, 6-8 November 2017). Atlantic Salmon Trust, Edinburgh. 72 p.
2018Crozier
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Calibration and validation of linked water temperature models for the Shasta Reservoir and the Sacramento River from 2000 to 2015
Daniels, Miles E., Vamsi K. Sridharan, Sara N. John, and Eric M. Danner
2018
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-597. 60 p.
Calibration and validation of linked water temperature models for the Shasta Reservoir and the Sacramento River from 2000 to 2015 Daniels, Miles E., Vamsi K. Sridharan, Sara N. John, and Eric M. Danner U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-597. 60 p.
2018Daniels2
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Estimating Cryptosporidium and Giardia disease burdens for children drinking untreated groundwater in a rural population in India
Daniels, Miles E., Woutrina A. Smith, and Marion W. Jenkins
2018
PLoS Neglected Tropical Diseases 12(1):e0006231
Estimating Cryptosporidium and Giardia disease burdens for children drinking untreated groundwater in a rural population in India Daniels, Miles E., Woutrina A. Smith, and Marion W. Jenkins PLoS Neglected Tropical Diseases 12(1):e0006231
2018Daniels
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Large batoid fishes frequently eat stingrays despite skeletal damage [abstract]
Dean, M.N., J.J. Bizzarro, B. Clark, C.J. Underwood, and Z. Johanson
2018
Integrative and Comparative Biology 58(supp.1):e304
Large batoid fishes frequently eat stingrays despite skeletal damage [abstract] Dean, M.N., J.J. Bizzarro, B. Clark, C.J. Underwood, and Z. Johanson Integrative and Comparative Biology 58(supp.1):e304
2018Dean
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The combined status of blue and deacon rockfishes in U.S. waters off California and Oregon in 2017
Dick, E.J., Aaron Berger, Joe Bizzarro, Katelyn Bosley, Jason Cope, John Field, Libby Gilbert-Horvath, Nicholas Grunloh, Morgan Ivens-Duran, Rebecca Miller, Kristin Privitera-Johnson, and Brett T. Rodomsky
2018
Pacific Fishery Management Council, Portland, Oregon. 377 p.
The combined status of blue and deacon rockfishes in U.S. waters off California and Oregon in 2017 Dick, E.J., Aaron Berger, Joe Bizzarro, Katelyn Bosley, Jason Cope, John Field, Libby Gilbert-Horvath, Nicholas Grunloh, Morgan Ivens-Duran, Rebecca Miller, Kristin Privitera-Johnson, and Brett T. Rodomsky Pacific Fishery Management Council, Portland, Oregon. 377 p.
2018Dick
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A salmonid individual-based model as a proposed decision support tool for management of a large regulated river
Dudley, Peter N.
2018
Ecosphere 9(1):e02074 (17 p.)
A salmonid individual-based model as a proposed decision support tool for management of a large regulated river Dudley, Peter N. Ecosphere 9(1):e02074 (17 p.)
2018Dudley
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Stock assessment update of blackgill rockfish, Sebastes melanostomus, in the Conception and Monterey INPFC areas for 2017
Field, John C., and Xi He
2018
Pacific Fishery Management Council, Portland, Oregon. 96 p.
Stock assessment update of blackgill rockfish, Sebastes melanostomus, in the Conception and Monterey INPFC areas for 2017 Field, John C., and Xi He Pacific Fishery Management Council, Portland, Oregon. 96 p.
2018Field
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Environmental and geographic relationships among salmon forage assemblages along the continental shelf of the California Current
Friedman, Whitney R., Jarrod A. Santora, Isaac D. Schroeder, David D. Huff, Richard D. Brodeur, John C. Field, and Brian K. Wells
2018
Marine Ecology Progress Series 596:181-198
Environmental and geographic relationships among salmon forage assemblages along the continental shelf of the California Current Friedman, Whitney R., Jarrod A. Santora, Isaac D. Schroeder, David D. Huff, Richard D. Brodeur, John C. Field, and Brian K. Wells Marine Ecology Progress Series 596:181-198
2018Friedman
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A new single nucleotide polymorphism database for rainbow trout generated through whole genome resequencing
Gao, Guangtu, Torfinn Nome, Devon E. Pearse, Thomas Moen, Kerry A. Naish, Gary H. Thorgaard, Sigbjorn Lien, and Yniv Palti
2018
Frontiers in Genetics 9:147 (11 p.)
A new single nucleotide polymorphism database for rainbow trout generated through whole genome resequencing Gao, Guangtu, Torfinn Nome, Devon E. Pearse, Thomas Moen, Kerry A. Naish, Gary H. Thorgaard, Sigbjorn Lien, and Yniv Palti Frontiers in Genetics 9:147 (11 p.)
2018Gao
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Social information links individual behavior to population and community dynamics
Gil, Michael A., Andrew M. Hein, Orr Spiegel, Marissa L. Baskett, and Andrew Sih
2018
Trends in Ecology and Evolution 33(7):535-548
Social information links individual behavior to population and community dynamics Gil, Michael A., Andrew M. Hein, Orr Spiegel, Marissa L. Baskett, and Andrew Sih Trends in Ecology and Evolution 33(7):535-548
2018Gil
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Seasonal floodplain-tidal slough complex supports size variation for juvenile Chinook salmon (Oncorhynchus tshawytscha)
Goertler, Pascale A.L., Ted R. Sommer, William H. Satterthwaite, and Brian M. Schreier
2018
Ecology of Freshwater Fish 27(2):580-593
Seasonal floodplain-tidal slough complex supports size variation for juvenile Chinook salmon (Oncorhynchus tshawytscha) Goertler, Pascale A.L., Ted R. Sommer, William H. Satterthwaite, and Brian M. Schreier Ecology of Freshwater Fish 27(2):580-593
2018Goertler
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Southwest
Gonzalez, Patrick, Gregg M. Garfin, David D. Breshears, Keely M. Brooks, Heidi E. Brown, Emile H. Elias, Amrith Gunasekara, Nancy Huntly, Julie K. Maldonado, Nathan J. Mantua, Helene G. Margolis, Skyli McAfee, Beth Rose Middleton, and Bradley H. Udall
2018
In: Fourth National Climate Assessment, volume II: Impacts, risks, and adaptation in the United States, p. 1101-1184. U.S. Global Change Research Program.
Southwest Gonzalez, Patrick, Gregg M. Garfin, David D. Breshears, Keely M. Brooks, Heidi E. Brown, Emile H. Elias, Amrith Gunasekara, Nancy Huntly, Julie K. Maldonado, Nathan J. Mantua, Helene G. Margolis, Skyli McAfee, Beth Rose Middleton, and Bradley H. Udall In: Fourth National Climate Assessment, volume II: Impacts, risks, and adaptation in the United States, p. 1101-1184. U.S. Global Change Research Program.
2018Gonzalez
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How survival curves affect populations' vulnerability to climate change
Halley, John M., Kyle S. Van Houtan, and Nate Mantua
2018
PLoS ONE 13(9):e0203124 (18 p.)
How survival curves affect populations' vulnerability to climate change Halley, John M., Kyle S. Van Houtan, and Nate Mantua PLoS ONE 13(9):e0203124 (18 p.)
2018Halley
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Quantitative classification of animal behaviours from time-series tracking data: machine learning techniques [abstract]
Hamda, N.T., A. Hein, B. Martin, and E. Danner
2018
Integrative and Comparative Biology 58(supp.1):e87
Quantitative classification of animal behaviours from time-series tracking data: machine learning techniques [abstract] Hamda, N.T., A. Hein, B. Martin, and E. Danner Integrative and Comparative Biology 58(supp.1):e87
2018Hamda
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River response to large-dam removal in a Mediterranean hydroclimatic setting: Carmel River, California, USA
Harrison, Lee R., Amy E. East, Douglas P. Smith, Joshua B. Logan, Rosealea M. Bond, Colin L. Nicol, Thomas H. Williams, David A. Boughton, Kaitlyn Chow, and Lauren Luna
2018
Earth Surface Processes and Landforms 43(15):3009-3021
River response to large-dam removal in a Mediterranean hydroclimatic setting: Carmel River, California, USA Harrison, Lee R., Amy E. East, Douglas P. Smith, Joshua B. Logan, Rosealea M. Bond, Colin L. Nicol, Thomas H. Williams, David A. Boughton, Kaitlyn Chow, and Lauren Luna Earth Surface Processes and Landforms 43(15):3009-3021
2018Harrison2
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Ecosystem status report of the California Current for 2018: A summary of ecosystem indicators compiled by the California Current Integrated Ecosystem Assessment Team (CCIEA)
Harvey, Chris, Newell Garfield, Gregory Williams, Nick Tolimieri, Isaac Schroeder, Elliott Hazen, Kelly Andrews, Katie Barnas, Steven Bograd, Richard Brodeur, Brian Burke, Jason Cope, Lynn deWitt, John Field, Jennifer Fisher, Thomas Good, Correigh Greene, Daniel Holland, Mary Hunsicker, Michael Jacox, Stephen Kasperski, Su Kim, Andrew Leising, Sharon Melin, Cheryl Morgan, Barbara Muhling, Stuart Munsch, Karma Norman, William Peterson, Melissa Poe, Jameal Samhouri, William Sydeman, Julie Thayer, Andrew Thompson, Desiree Tommasi, Anna Varney, Brian Wells, Thomas Williams, Jeannette Zamon, Dan Lawson, Sean Anderson, Jin Gao, Mike Litzow, Sam McClatchie, Eric Ward, and Stephani Zador
2018
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-145. 69 p.
Ecosystem status report of the California Current for 2018: A summary of ecosystem indicators compiled by the California Current Integrated Ecosystem Assessment Team (CCIEA) Harvey, Chris, Newell Garfield, Gregory Williams, Nick Tolimieri, Isaac Schroeder, Elliott Hazen, Kelly Andrews, Katie Barnas, Steven Bograd, Richard Brodeur, Brian Burke, Jason Cope, Lynn deWitt, John Field, Jennifer Fisher, Thomas Good, Correigh Greene, Daniel Holland, Mary Hunsicker, Michael Jacox, Stephen Kasperski, Su Kim, Andrew Leising, Sharon Melin, Cheryl Morgan, Barbara Muhling, Stuart Munsch, Karma Norman, William Peterson, Melissa Poe, Jameal Samhouri, William Sydeman, Julie Thayer, Andrew Thompson, Desiree Tommasi, Anna Varney, Brian Wells, Thomas Williams, Jeannette Zamon, Dan Lawson, Sean Anderson, Jin Gao, Mike Litzow, Sam McClatchie, Eric Ward, and Stephani Zador U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-145. 69 p.
2018Harvey
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California Current Integrated Ecosystem Assessment (CCIEA): California Current Ecosystem status report, 2018
Harvey, Chris, Toby Garfield, Greg Williams, Nick Tolimieri, and Elliott Hazen (eds.)
2018
A report of the NOAA CCIEA Team to the Pacific Fishery Management Council. 70 p.
California Current Integrated Ecosystem Assessment (CCIEA): California Current Ecosystem status report, 2018 Harvey, Chris, Toby Garfield, Greg Williams, Nick Tolimieri, and Elliott Hazen (eds.) A report of the NOAA CCIEA Team to the Pacific Fishery Management Council. 70 p.
2018Harvey2
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Stock assessment update: Status of bocaccio, Sebastes paucispinis, in the Conception, Monterey and Eureka INPFC areas for 2017
He, Xi, and John C. Field
2018
Pacific Fishery Management Council, Portland, Oregon. 224 p.
Stock assessment update: Status of bocaccio, Sebastes paucispinis, in the Conception, Monterey and Eureka INPFC areas for 2017 He, Xi, and John C. Field Pacific Fishery Management Council, Portland, Oregon. 224 p.
2018He
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Conserved behavioral circuits govern high-speed decision-making in wild fish shoals
Hein, Andrew M., Michael A. Gil, Colin R. Twomey, Iain D. Couzin, and Simon A. Levin
2018
Proceedings of the National Academy of Sciences of the United States of America 115(48):12224-12228
Conserved behavioral circuits govern high-speed decision-making in wild fish shoals Hein, Andrew M., Michael A. Gil, Colin R. Twomey, Iain D. Couzin, and Simon A. Levin Proceedings of the National Academy of Sciences of the United States of America 115(48):12224-12228
2018Hein
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Recent advances in conservation and population genomics data analysis
Hendricks, Sarah, Eric C. Anderson, Tiago Antao, Louis Bernatchez, Brenna R. Forester, Brittany Garner, Brian K. Hand, Paul A. Hohenlohe, Martin Kardos, Ben Koop, Arun Sethuraman, Robin S. Waples, and Gordon Luikart
2018
Evolutionary Applications 11(8):1197-1211
Recent advances in conservation and population genomics data analysis Hendricks, Sarah, Eric C. Anderson, Tiago Antao, Louis Bernatchez, Brenna R. Forester, Brittany Garner, Brian K. Hand, Paul A. Hohenlohe, Martin Kardos, Ben Koop, Arun Sethuraman, Robin S. Waples, and Gordon Luikart Evolutionary Applications 11(8):1197-1211
2018Hendricks
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Managing for salmon resilience in California's variable and changing climate
Herbold, Bruce, Stephanie M. Carlson, Rene Henery, Rachel C. Johnson, Nate Mantua, Michelle McClure, Peter Moyle, and Ted Sommer
2018
San Francisco Estuary and Watershed Science 16(2):3 (23 p.)
Managing for salmon resilience in California's variable and changing climate Herbold, Bruce, Stephanie M. Carlson, Rene Henery, Rachel C. Johnson, Nate Mantua, Michelle McClure, Peter Moyle, and Ted Sommer San Francisco Estuary and Watershed Science 16(2):3 (23 p.)
2018Herbold
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Challenges and solutions for studying collective animal behaviour in the wild
Hughey, Lacey F., Andrew M. Hein, Ariana Strandburg-Peshkin, and Frants H. Jensen
2018
Philosophical Transactions of the Royal Society B 373(1746):20170005 (13 p.)
Challenges and solutions for studying collective animal behaviour in the wild Hughey, Lacey F., Andrew M. Hein, Ariana Strandburg-Peshkin, and Frants H. Jensen Philosophical Transactions of the Royal Society B 373(1746):20170005 (13 p.)
2018Hughey
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Forcing of multiyear extreme ocean temperatures that impacted California Current living marine resources in 2016
Jacox, Michael G., Michael A. Alexander, Nathan J. Mantua, James D. Scott, Gaelle Hervieux, Robert S. Webb, and Francisco E. Werner
2018
Bulletin of the American Meteorological Society 99(1, supp.):S27-S33
Forcing of multiyear extreme ocean temperatures that impacted California Current living marine resources in 2016 Jacox, Michael G., Michael A. Alexander, Nathan J. Mantua, James D. Scott, Gaelle Hervieux, Robert S. Webb, and Francisco E. Werner Bulletin of the American Meteorological Society 99(1, supp.):S27-S33
2018Jacox
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Massive mortality of a planktivorous seabird in response to a marine heatwave
Jones, Timothy, Julia K. Parrish, William T. Peterson, Eric P. Bjorkstedt, Nicholas A. Bond, Lisa T. Ballance, Victoria Bowes, J. Mark Hipfner, Hillary K. Burgess, Jane E. Dolliver, Kirsten Lindquist, Jacqueline Lindsey, Hannahrose M. Nevins, Roxanne R. Robertson, Jan Roletto, Laurie Wilson, Trevor Joyce, and James Harvey
2018
Geophysical Research Letters 45(7):3193-3202
Massive mortality of a planktivorous seabird in response to a marine heatwave Jones, Timothy, Julia K. Parrish, William T. Peterson, Eric P. Bjorkstedt, Nicholas A. Bond, Lisa T. Ballance, Victoria Bowes, J. Mark Hipfner, Hillary K. Burgess, Jane E. Dolliver, Kirsten Lindquist, Jacqueline Lindsey, Hannahrose M. Nevins, Roxanne R. Robertson, Jan Roletto, Laurie Wilson, Trevor Joyce, and James Harvey Geophysical Research Letters 45(7):3193-3202
2018Jones
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Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2017 run
Klamath River Technical Team
2018
Klamath River Technical Team. 23 p.
Klamath River fall Chinook salmon age-specific escapement, river harvest, and run size estimates, 2017 run Klamath River Technical Team Klamath River Technical Team. 23 p.
2018Klamath1
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Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2018 season
Klamath River Technical Team
2018
Klamath River Technical Team. 31 p.
Ocean abundance projections and prospective harvest levels for Klamath River fall Chinook, 2018 season Klamath River Technical Team Klamath River Technical Team. 31 p.
2018Klamath2
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2012 National Ocean Recreation Expenditure Survey
Kosaka, R., and S. Steinback
2018
NOAA Technical Memorandum NMFS-F/SPO-185. 102 p.
2012 National Ocean Recreation Expenditure Survey Kosaka, R., and S. Steinback NOAA Technical Memorandum NMFS-F/SPO-185. 102 p.
2018Kosaka
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Fisheries Research 204:258-268
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Michel, Cyril J., Joseph M. Smith, Nicholas J. Demetras, David D. Huff, and Sean A. Hayes
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1
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Monk, Melissa (ed.), John Field, Tom Laidig, Aaron Mamula, Nick Wegner, and William Watson
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In: Report of the Technical Subcommittee of the Canada-United States Groundfish Committee: 59th annual meeting of the TSC (April 24-25, 2018, Santa Cruz, California), p. 354-373. Pacific States Marine Fisheries Commission.
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1
1
0
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Monk, Melissa H., Xi He, and John Budrick
2018
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Mora, Ethan A., Ryan D. Battleson, Steven T. Lindley, Michael J. Thomas, Russ Bellmer, Liam J. Zarri, and A. Peter Klimley
2018
Transactions of the American Fisheries Society 147(1):195-203
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0
0
0
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Canadian Journal of Fisheries and Aquatic Sciences 75(12):2184-2197
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Pearse, Devon E., and Matthew A. Campbell
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Fisheries 43(10):472-484
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Perry, Russell W., Adam C. Pope, Jason G. Romine, Patricia L. Brandes, Jon R. Burau, Aaron R. Blake, Arnold J. Ammann, and Cyril J. Michel
2018
Canadian Journal of Fisheries and Aquatic Sciences 75(11):1886-1901
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0
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Phillis, Corey C., Anna M. Sturrock, Rachel C. Johnson, and Peter K. Weber
2018
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0
0
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Ralston, Stephen, Emmanis Dorval, Laura Ryley, Keith M. Sakuma, and John C. Field
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0
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Fisheries Research 206:247-258
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0
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Riddell, Brian E., Richard D. Brodeur, Alexander V. Bugaev, Paul Moran, James M. Murphy, Joseph A. Orsi, Marc Trudel, Laurie A. Weitkamp, Brian K. Wells, and Alex C. Wertheimer
2018
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0
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0
0
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0
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Sakuma, Keith
2018
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0
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Satterthwaite, William H., and Michael R. O'Farrell
2018
Fisheries Research 199:171-176
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Schultz, Luke, Neil F. Thompson, C. Nathan Cathcart, and Thomas H. Williams
2018
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0
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0
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Speir, Cameron, Aaron Mamula, and Michael S. Mohr
2018
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0
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1
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1
1
0
0
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2018
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0
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0
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0
0
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Journal of Marine Systems 185:25-39
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1
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0
0
A comparison of length distributions of rockfishes (Sebastes spp.) from submersible and trawl surveys off central California
Watters, Diana L., and E.J. Dick
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Fishery Bulletin 116(3):291-301
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0
1
0
0
0
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0
0
0
1
0
0
0
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2018
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0
Fishery collapse, recovery, and the cryptic decline of wild salmon on a major California river
Willmes, Malte, James A. Hobbs, Anna M. Sturrock, Zachary Bess, Levi S. Lewis, Justin J.G. Glessner, Rachel C. Johnson, Ryon Kurth, and Jason Kindopp
2018
Canadian Journal of Fisheries and Aquatic Sciences 75(11):1836-1848
Fishery collapse, recovery, and the cryptic decline of wild salmon on a major California river Willmes, Malte, James A. Hobbs, Anna M. Sturrock, Zachary Bess, Levi S. Lewis, Justin J.G. Glessner, Rachel C. Johnson, Ryon Kurth, and Jason Kindopp Canadian Journal of Fisheries and Aquatic Sciences 75(11):1836-1848
2018Willmes
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1
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Extensive hybridization following a large escape of domesticated Atlantic salmon in the Northwest Atlantic
Wringe, Brendan F., Nicholas W. Jeffery, Ryan R.E. Stanley, Lorraine C. Hamilton, Eric C. Anderson, Ian A. Fleming, Carole Grant, J. Brian Dempson, Geoff Veinott, Steven J. Duffy, and Ian R. Bradbury
2018
Communications Biology 1:108 (9 p.)
Extensive hybridization following a large escape of domesticated Atlantic salmon in the Northwest Atlantic Wringe, Brendan F., Nicholas W. Jeffery, Ryan R.E. Stanley, Lorraine C. Hamilton, Eric C. Anderson, Ian A. Fleming, Carole Grant, J. Brian Dempson, Geoff Veinott, Steven J. Duffy, and Ian R. Bradbury Communications Biology 1:108 (9 p.)
2018Wringe
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0
0
0
1
0
0
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Incidence of disturbance and damage to deep-sea corals and sponges in areas of high trawl bycatch near the California and Oregon border
Yoklavich, Mary M., Thomas E. Laidig, Kaitlin Graiff, M. Elizabeth Clarke, and Curt E. Whitmire
2018
Deep Sea Research II 150:156-163
Incidence of disturbance and damage to deep-sea corals and sponges in areas of high trawl bycatch near the California and Oregon border Yoklavich, Mary M., Thomas E. Laidig, Kaitlin Graiff, M. Elizabeth Clarke, and Curt E. Whitmire Deep Sea Research II 150:156-163
2018Yoklavich
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0
0
0
1
0
0
0
Molecular population genetics of the northern elephant seal Mirounga angustirostris
Abadia-Cardoso, Alicia, Nelson B. Freimer, Kristy Deiner, and John Carlos Garza
2017
Journal of Heredity 108(6):618-627
Molecular population genetics of the northern elephant seal Mirounga angustirostris Abadia-Cardoso, Alicia, Nelson B. Freimer, Kristy Deiner, and John Carlos Garza Journal of Heredity 108(6):618-627
2017AbadiaCardoso
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0
0
0
1
0
0
0
Temporally varying natural mortality: Sensitivity of a virtual population analysis and an exploration of alternatives
Allen, Shanae D., William H. Satterthwaite, David G. Hankin, Diana J. Cole, and Michael S. Mohr
2017
Fisheries Research 185:185-197
Temporally varying natural mortality: Sensitivity of a virtual population analysis and an exploration of alternatives Allen, Shanae D., William H. Satterthwaite, David G. Hankin, Diana J. Cole, and Michael S. Mohr Fisheries Research 185:185-197
2017Allen
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0
0
0
1
0
0
0
Genetic and individual assignment of tetraploid green sturgeon with SNP assay data
Anderson, Eric C., Thomas C. Ng, Eric D. Crandall, and John Carlos Garza
2017
Conservation Genetics 18(5):1119-1130
Genetic and individual assignment of tetraploid green sturgeon with SNP assay data Anderson, Eric C., Thomas C. Ng, Eric D. Crandall, and John Carlos Garza Conservation Genetics 18(5):1119-1130
2017Anderson
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0
0
0
1
0
0
0
Evolutionary restoration potential evaluated through the use of a trait-linked genetic marker
Apgar, Travis M., Devon E. Pearse, and Eric P. Palkovacs
2017
Evolutionary Applications 10(5):485-497
Evolutionary restoration potential evaluated through the use of a trait-linked genetic marker Apgar, Travis M., Devon E. Pearse, and Eric P. Palkovacs Evolutionary Applications 10(5):485-497
2017Apgar
1
0
0
0
1
0
0
0
Discovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern
Baetscher, Diana S., Daniel J. Hasselman, Kerry Reid, Eric P. Palkovacs, and John Carlos Garza
2017
Ecology and Evolution 7(17):6638-6648
Discovery and characterization of single nucleotide polymorphisms in two anadromous alosine fishes of conservation concern Baetscher, Diana S., Daniel J. Hasselman, Kerry Reid, Eric P. Palkovacs, and John Carlos Garza Ecology and Evolution 7(17):6638-6648
2017Baetscher
1
0
0
0
1
0
0
0
Moving forward in circles: challenges and opportunities in modelling population cycles
Barraquand, Frederic, Stilianos Louca, Karen C. Abbott, Christina A. Cobbold, Flora Cordoleani, Donald L. DeAngelis, Bret D. Elderd, Jeremy W. Fox, Priscilla Greenwood, Frank M. Hilker, Dennis L. Murray, Christopher R. Stieha, Rachel A. Taylor, Kelsey Vitense, Gail S.K. Wolkowicz, and Rebecca C. Tyson
2017
Ecology Letters 20(8):1074-1092
Moving forward in circles: challenges and opportunities in modelling population cycles Barraquand, Frederic, Stilianos Louca, Karen C. Abbott, Christina A. Cobbold, Flora Cordoleani, Donald L. DeAngelis, Bret D. Elderd, Jeremy W. Fox, Priscilla Greenwood, Frank M. Hilker, Dennis L. Murray, Christopher R. Stieha, Rachel A. Taylor, Kelsey Vitense, Gail S.K. Wolkowicz, and Rebecca C. Tyson Ecology Letters 20(8):1074-1092
2017Barraquand
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0
1
0
0
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Diet composition and foraging ecology of U.S. Pacific Coast groundfishes with applications for fisheries management
Bizzarro, Joseph J., Mary M. Yoklavich, and W. Waldo Wakefield
2017
Environmental Biology of Fishes 100(4):375-393
Diet composition and foraging ecology of U.S. Pacific Coast groundfishes with applications for fisheries management Bizzarro, Joseph J., Mary M. Yoklavich, and W. Waldo Wakefield Environmental Biology of Fishes 100(4):375-393
2017Bizzarro
1
0
0
0
1
0
0
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Oceanographic context for baseline characterization and future evaluation of MPAs along California's North Coast
Bjorkstedt, Eric P., Marisol Garcia-Reyes, Marcel Losekoot, William Sydeman, John Largier, and Brian Tissot
2017
Technical report to California Sea Grant for Projects R/MPA-31A, R/MPA-31B, and R/MPA-31C. 88 p.
Oceanographic context for baseline characterization and future evaluation of MPAs along California's North Coast Bjorkstedt, Eric P., Marisol Garcia-Reyes, Marcel Losekoot, William Sydeman, John Largier, and Brian Tissot Technical report to California Sea Grant for Projects R/MPA-31A, R/MPA-31B, and R/MPA-31C. 88 p.
2017Bjorkstedt
1
0
0
0
1
0
0
0
Data summary - Carmel River steelhead population 2013-2016
Boughton, David
2017
National Marine Fisheries Service, Southwest Fisheries Science Center, Santa Cruz, California. 17 p.
Data summary - Carmel River steelhead population 2013-2016 Boughton, David National Marine Fisheries Service, Southwest Fisheries Science Center, Santa Cruz, California. 17 p.
2017Boughton
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0
0
0
1
0
0
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Spatial structure of water-quality impacts and foraging opportunities for steelhead in the Russian River Estuary: an energetics perspective
Boughton, David, Joshua Fuller, Gregg Horton, Eric Larson, William Matsubu, and Charles Simenstad
2017
U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-569. 38 p.
Spatial structure of water-quality impacts and foraging opportunities for steelhead in the Russian River Estuary: an energetics perspective Boughton, David, Joshua Fuller, Gregg Horton, Eric Larson, William Matsubu, and Charles Simenstad U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-569. 38 p.
2017Boughton2
1
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1
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Hot eats and cool creeks: juvenile Pacific salmonids use mainstem prey while in thermal refuges
Brewitt, Kimberly S., Eric M. Danner, and Jonathan W. Moore
2017
Canadian Journal of Fisheries and Aquatic Sciences 74(10):1588-1602
Hot eats and cool creeks: juvenile Pacific salmonids use mainstem prey while in thermal refuges Brewitt, Kimberly S., Eric M. Danner, and Jonathan W. Moore Canadian Journal of Fisheries and Aquatic Sciences 74(10):1588-1602
2017Brewitt
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0
0
0
1
0
0
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Evolutionary affinities of the unfathomable Parabrotulidae: Molecular data indicate placement of Parabrotula within the family Bythitidae, Ophidiiformes
Campbell, Matthew A., Jorgen G. Nielsen, Tetsuya Sado, Chuya Shinzato, Miyuki Kanda, Takashi P. Satoh, and Masaki Miya
2017
Molecular Phylogenetics and Evolution 109:337-342
Evolutionary affinities of the unfathomable Parabrotulidae: Molecular data indicate placement of Parabrotula within the family Bythitidae, Ophidiiformes Campbell, Matthew A., Jorgen G. Nielsen, Tetsuya Sado, Chuya Shinzato, Miyuki Kanda, Takashi P. Satoh, and Masaki Miya Molecular Phylogenetics and Evolution 109:337-342
2017Campbell
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1
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Extremely low allelic diversity of microsatellite markers in the banded guitarfish (Zapteryx exasperata). Supplementary material for Castillo-Paez et al., Microsatellite records for volume 9, issue 1
Castillo-Paez, Ana, John Carlos Garza, Miguel Angel del Rio-Portilla, Celia Isabel Bisbal-Pardo, and Axayacatl Rocha-Olivares
2017
Conservation Genetics Resources 9(1):165-171
Extremely low allelic diversity of microsatellite markers in the banded guitarfish (Zapteryx exasperata). Supplementary material for Castillo-Paez et al., Microsatellite records for volume 9, issue 1 Castillo-Paez, Ana, John Carlos Garza, Miguel Angel del Rio-Portilla, Celia Isabel Bisbal-Pardo, and Axayacatl Rocha-Olivares Conservation Genetics Resources 9(1):165-171
2017Castillo
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