NOAA FISHERIES

Preseason report III: Council adopted management measures and environmental assessment Part 3 for 2022 ocean salmon fishery regulations Pacific Fishery Management Council (Salmon Technical Team) Pacific Fishery Management Council, Portland, Oregon. 60 p.

Phylogenomic species delimitation dramatically reduces species diversity in an Antarctic adaptive radiation Parker, Elyse, Alex Dornburg, Carl D. Struthers, Christopher D. Jones, and Thomas J. Near Systematic Biology 71(1):58-77

Globally important refuge for the loggerhead sea turtle: Maio Island, Cabo Verde Patino-Martinez Juan, Leno Dos Passos, Ines O. Afonso, Arnau Teixidor, Manjula Tiwari, Tamas Szekeley, and Rocio Moreno Oryx 56(1):54-62

Trade-offs between bycatch and target catches in static versus dynamic fishery closures Pons, Maite, Jordan T. Watson, Daniel Ovando, Sandra Andraka, Stephanie Brodie, Andres Domingo, Mark Fitchett, Rodrigo Forselledo, Martin Hall, Elliott L. Hazen, Jason E. Jannot, Miguel Herrera, Sebastian Jimenez, David M. Kaplan, Sven Kerwath, Jon Lopez, Jon McVeigh, Lucas Pacheco, Liliana Rendon, Kate Richerson, Rodrigo Sant'Ana, Rishi Sharma, James A. Smith, Kayleigh Somers, and Ray Hilborn Proceedings of the National Academy of Sciences of the United States of America 119(4):e2114508119 (11 p.)

Kinship genomics approach to study mating systems in a depleted sea turtle rookery Prakash, Shritika S., Monal M. Lal, Peter H. Dutton, Ciro Rico, and Susanna Piovano Regional Studies in Marine Science 51:102174 (9 p.)

Hedonic price functions and market structure: An analysis of supply-motivated submarkets for salmon in California Ray, Kevin D., Daniel K. Lew, and Rosemary Kosaka Marine Resource Economics 37(2):135-154

The critically endangered vaquita is not doomed to extinction by inbreeding depression Robinson, Jacqueline A. Robinson, Christopher C. Kyriazis, Sergio F. Nigenda-Morales, Annabel C. Beichman, Lorenzo Rojas-Bracho, Kelly M. Robertson, Michael C. Fontaine, Robert K. Wayne, Kirk E. Lohmueller, Barbara L. Taylor, and Phillip A. Morin Science 376(6593):635-639

Chaos is not rare in natural ecosystems Rogers, Tanya L., Bethany J. Johnson, and Stephan B. Munch Nature Ecology and Evolution 6:1105-1111

A summary report of life history information on the central subpopulation of Northern Anchovy (Engraulis mordax) for the 2021 stock assessment Schwartzkopf, Brittany D., Emmanis Dorval, Kelsey C. James, Jonathan M. Walker, Owyn E. Snodgrass, Dianna L. Porzio, and Brad E. Erisman U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC 659. 76 p.

Diversity in habitat use by White Sturgeon revealed using fin ray geochemistry Sellheim, Kirsten, Malte Willmes, Levi S. Lewis, Jamie Sweeney, Joseph Merz, and James A. Hobbs Frontiers in Marine Science 9:859038 (18 p.)

Global decline in ocean memory over the 21st century Shi, Hui, Fei-Fei Jin, Robert C.J. Wills, Michael G. Jacox, Dillon J. Amaya, Bryan A. Black, Ryan R. Rykaczewski, Steven J. Bograd, Marisol Garcia-Reyes, and William J. Sydeman Science Advances 8(18):eabm3468 (9 p.)

Synthesizing integrated ecosystem research to create informed stock-specific indicators for next generation stock assessments Shotwell, S.K., J.L. Pirtle, J.T. Watson, A.L. Deary, M.J. Doyle, S.J. Barbeaux, M.W. Dorn, G.A. Gibson, E.D. Goldstein, D.H. Hanselman, A.J. Hermann, P.J.F. Hulson, B.J. Laurel, J.H. Moss, O.A. Ormseth, D. Robinson, L.A. Rogers, C.N. Rooper, I. Spies, W.W. Strasburger, R.M. Suryan, and J.J. Vollenweider Deep Sea Research II 198:105070 (28 p.)

mmrefpoints: Projecting long-term marine mammal abundance with bycatch Siple, Margaret C., Andre E. Punt, Tessa B. Francis, Philip S. Hammond, Dennis Heinemann, Kristy J. Long, Jeffrey Moore, Maritza Sepulveda, Randall R. Reeves, Gudjon Mar Sigurdsson, Gisli Vikingsson, Paul R. Wade, Rob Williams, and Alexandre N. Zerbini Journal of Open Source Software 7(71):3888 (4 p.)

Rapid recover of depleted abalone in Isla Natividad, Baja California, Mexico Smith, Alexandra, Juan Domingo Aguilar, Charles Boch, Giulio De Leo, Arturo Hernandez-Velasco, Stephanie Houck, Ramon Martinez, Stephen Monismith, Jorge Torre, C. Brock Woodson, and Fiorenza Micheli Ecosphere 13(3):e4002 (10 p.)

Projected novelty in the climate envelope of the California Current at multiple spatial-temporal scales Smith, James A., Mercedes Poso Buil, Jerome Fiechter, Desiree Tommasi, and Michael G. Jacox PLoS Climate 1(4):e0000022 (19 p.)

New management unit for conservation of the Endangered green turtle Chelonia mydas at the Xisha (Paracel) Islands, South China Sea Song, Jia-hao, Bai-an Lin, Yu-yan Jia, Peter H. Dutton, Bin Kang, George H. Balazs, and Min Liu Endangered Species Research 47:145-154

2022 highly migratory species annual report Southwest Fisheries Science Center U.S. Department of Commerce, NOAA Southwest Fisheries Science Center, Administrative Report LJ-22-02. 25 p.

Can remote sensing fill the United States' monitoring gap for watershed management? Sridharan, Vamsi Krishna, Saurav Kumar, and Swetha Madhur Kumar Water 14(13):1985 (16 p.)

Bayesian prediction of fishery biological impacts from limited data: A deep-set buoy gear case study Stohs, Stephen M., and Karter M. Harmon Fisheries Research 249:106228 (13 p.)

Larval transport pathways from three prominent sand lance habitats in the Gulf of Maine Suca, Justin J., Rubao Ji, Hannes Baumann, Kent Pham, Tammy L. Silva, David N. Wiley, Zhixuan Feng, and Joel K. Llopiz Fisheries Oceanography 31(3):333-352

Putting the Pacific marine heatwave into perspective: The response of larval fish off southern California to unprecedented warming in 2014-2016 relative to the previous 65 years Thompson, Andrew R., Noah J. Ben-Aderet, Noelle M. Bowlin, Dovi Kacev, Rasmus Swalethorp, and William Watson Global Change Biology 28(5):1766-1785

When are bacteria really gazelles? Comparing patchy ecologies with dimensionless numbers Urmy, Samuel S., Alli N. Cramer, Tanya L. Rogers, Jenna Sullivan-Stack, Marian Schmidt, Simon D. Stewart, and Celia C. Symons Ecology Letters 25(5):1323-1341

Implications of large-effect loci for conservation: A review and case study with Pacific salmon Waples, Robin S., Michael J. Ford, Krista Nichols, Marty Kardos, Jim Myers, Tasha Q. Thompson, Eric C. Anderson, Ilana J. Koch, Garrett McKinney, Michael R. Miller, Kerry Naish, Shawn R. Narum, Kathleen G. O'Malley, Devon E. Pearse, George R. Pess, Thomas P. Quinn, Todd R. Seamons, Adrian Spidle, Kenneth I. Warheit, and Stuart C. Willis Journal of Heredity 113(2):121-144

Using seabird and whale distribution models to estimate spatial consumption of krill to inform fishery management Warwick-Evans, V., N. Kelly, L. Dalla Rosa, A. Friedlaender, J.T. Hinke, J.H. Kim, N. Kokubun, J.A. Santora, E.R. Secchi, E. Seyboth, and P.N. Trathan Ecosphere 13(6):e4083 (24 p.)

Estimating the average distribution of Antarctic krill Euphausia superba at the northern Antarctic Peninsula during austral summer and winter Warwick-Evans, V., S. Fielding, C.S. Reiss, G.M. Watters, and P.N. Trathan Polar Biology 45(5):857-871

Predator life history and prey ontogeny limit natural selection on the major armour gene, Eda, in threespine stickleback Wasserman, Ben A., Kerry Reid, Olivia M. Arredondo, Ann-Marie K. Osterback, Cynthia H. Kern, Joseph D. Kiernan, and Eric P. Palkovacs Ecology of Freshwater Fish 31(2):291-299

Applying empirical dynamic modeling to distinguish abiotic and biotic drivers of population fluctuations in sympatric fishes Wasserman, Ben A., Tanya L. Rogers, Stephan B. Munch, and Eric P. Palkovacs Limnology and Oceanography 67(S1):S403-S415

A biogeographical assessment of deep-sea coral assemblages from coastwide visual surveys off California Watters, Diana L., Thomas E. Laidig, and Mary M. Yoklavich Deep Sea Research I 185:103773 (16 p.)

Spies in the deep: Ocean landers explore the deep sea Yang, Haleigh T., Kevin Hardy, Nicholas C. Wegner, Ashley Nicoll, Lisa A. Levin, and Natalya D. Gallo Frontiers for Young Minds 10:612101

Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi) Young, Matthew J., Veronica Larwood, Justin K. Clause, Miranda Bell-Tilcock, George Whitman, Rachel Johnson, and Frederick Feyrer Canadian Journal of Fisheries and Aquatic Sciences 79(1):21-30

Ocean connectivity drives trophic support for consumers in an intermittently closed coastal lagoon Young, Matthew, Frederick Feyrer, Darren Fong, Rachel Johnson, Tamara Kraus, Veronica Larwood, Elizabeth Stumpner, and Megan Young Estuarine, Coastal and Shelf Science 264:107665 (12 p.)

Population genetics and species distribution modeling highlight conservation needs of the endemic trout from the Northern Sierra Madre Occidental Abadia-Cardoso, A., R. Hernandez-Guzman, A. Varela-Romero, J.C. Garza, and F.J. Garcia-De Leon Conservation Genetics 22:629-643

Are long-term changes in mixed layer depth influencing North Pacific marine heatwaves? Amaya, Dillon J., Michael A. Alexander, Antonietta Capotondi, Clara Deser, Kristopher B. Karnauskas, Arthur J. Miller, and Nathan J. Mantua Bulletin of the American Meteorological Society 102(1):S59-S66

Social and economic outcomes of fisheries certification: Characterizing pathways of change in canned fish markets Anderson, Christopher M., Amber Himes-Cornell, Cristina Pita, Ashleigh Arton, Margaux Favret, Dan Averill, Stephen Stohs, and Catherine Sarah Longo Frontiers in Marine Science 8:791085 (16 p.)

Genomic signatures of divergent selection are associated with social behaviour for spinner dolphin ecotytpes Andrews, Kimberly R., Brendan Epstein, Matthew S. Leslie, Paul Fiedler, Phillip A. Morin, and A. Rus Hoelzel Molecular Ecology 30(9):1993-2008

Alternative migratory strategies are widespread in subyearling Chinook salmon Apgar, Travis M., Joseph E. Merz, Benjamin T. Martin, and Eric P. Palkovacs Ecology of Freshwater Fish 30(1):125-139

Assessing information-sharing networks within small-scale fisheries and the implications for conservation interventions Arlidge, William N.S., Josh A. Firth, Joanna Alfaro-Shigueto, Bruno Ibanez-Erquiaga, Jeffrey C. Mangel, Dale Squires, and E.J. Milner-Gulland Royal Society Open Science 8(11):211240 (16 p.)

Keeping close to the river, shore and surface: the first marine migration of brown trout (Salmo trutta) and Arctic charr (Salvelinus alpinus) post-smolts Atencio, Benjamin J., Eva B. Thorstad, Augun H. Rikardsen, and Jenny L.A. Jensen Journal of Fish Biology 99(2):462-471

Maternal environment drives larval rockfish gene expression patterns [abstract] Baker, J.B., K.V. Saksa, N.S. Kashef, D.M. Stafford, S.M. Sogard, S.L. Hamilton, and C.A. Logan Integrative and Comparative Biology 61(supp.1):e36-e37

A history of the tuna-dolphin problem: successes, failures, and lessons learned Ballance, Lisa T., Tim Gerrodette, Cleridy E. Lennert-Cody, Robert L. Pitman, and Dale Squires Frontiers in Marine Science 8:754755 (17 p.)

Species and population specific gene expression in blood transcriptomes of marine turtles Banerjee, Shreya M., Jamie Adkins Stoll, Camryn D. Allen, Jennifer M. Lynch, Heather S. Harris, Lauren Kenyon, Richard E. Connon, Eleanor J. Sterling, Eugenia Naro-Maciel, Kathryn McFadden, Margaret M. Lamont, James Benge, Nadia B. Fernandez, Jeffrey A. Seminoff, Scott R. Benson, Rebecca L. Lewison, Tomoharu Eguchi, Tammy M. Summers, Jessy R. Hapdei, Marc R. Rice, Summer Martin, T. Todd Jones, Peter H. Dutton, George H. Balazs, and Lisa M. Komoroske BMC Genomics 22:346 (16 p.)

Design of a flooded housing for a towed autonomous hydrophone recording system Barlow, Jay U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-647. 12 p.

Recommended snapshot length for acoustic point-transect surveys of intermittently available Cuvier's beaked whales Barlow, Jay, Jennifer S. Trickey, Gregory S. Schorr, Shannon Rankin, and Jeffrey E. Moore Journal of the Acoustical Society of America 149:3830-3840

Acoustic detection range and population density of Cuvier's beaked whales estimated from near-surface hydrophones Barlow, Jay, Selene Fregosi, Len Thomas, Danielle Harris, and Emily T. Griffiths Journal of the Acoustical Society of America 149(1):111-125

Acoustic detections of beaked whales, narrow-band high-frequency pulses and other odontocete cetaceans in the Southern Ocean using an autonomous towed hydrophone recorder Barlow, Jay, Ted Cheeseman, and Jennifer S. Trickey Deep Sea Research II 193:104973 (11 p.)

Improving the IEA approach using principles of open data science Bastille, Kimberly, Sean Hardison, Lynn deWitt, Jennifer Brown, Jameal Samhouri, Sarah Gaichas, Sean Lucey, Kelly Kearney, Ben Best, Scott Cross, Scott Large, and Ellen Spooner Coastal Management 49(1):72-89

Global COVID-19 lockdown highlights humans as both threats and custodians of the environment Bates, Amanda E., et al. Biological Conservation 263:109175 (18 p.)

Habitat-based density estimates for cetaceans within the waters of the U.S. Exclusive Economic Zone around the Hawaiian Archipelago Becker, Elizabeth A. Karin A. Forney, Erin M. Oleson, Amanda L. Bradford, Jeff E. Moore, and Jay Barlow U.S. Department of Commerce, NOAA Technical Memorandum NMFS-PIFSC-116. 32 p.

Regions of genetic divergence in depth-separated Sebastes rockfish species pairs: Depth as a potential driver of speciation Behrens, Kristen A., Quinn L. Girasek, Alex Sickler, John Hyde, and Vincent P. Buonaccorsi Molecular Ecology 30(17):4259-4275

Cross-sectoral externalities related to natural resources and ecosystem services Bellanger, Manuel, Robert Fonner, Daniel S. Holland, Gary D. Libecap, Douglas W. Lipton, Pierre Scemama, Cameron Speir, and Olivier Thebaud Ecological Economics 184:106990 (10 p.)

Biogeochemical processes create distinct isotopic fingerprints to track floodplain rearing of juvenile salmon Bell-Tilcock, Miranda, Carson A. Jeffres, Andrew L. Rypel, Malte Willmes, Richard A. Armstrong, Peter Holden, Peter B. Moyle, Nann A. Fangue, Jacob V.E. Katz, Ted R. Sommer, J. Louise Conrad, and Rachel C. Johnson PLoS ONE 16(10):e0257444 (23 p.)

Advancing diet reconstruction in fish eye lenses Bell-Tilcock, Miranda, Carson A. Jeffres, Andrew L. Rypel, Ted R. Sommer, Jacob V.E. Katz, George Whitman, and Rachel C. Johnson Methods in Ecology and Evolution 12(3):449-457

Analysis of digestive tract contents from loggerhead sea turtles Caretta Caretta (Linnaeus, 1758) stranded along the northwest coast of Morocco Benhardouze, Wafae, Mustapha Aksissou, and Manjula Tiwari Cahiers de Biologie Marine 62(3):205-215

Data management and interactive visualizations for the evolving Marine Biodiversity Observation Network Benson, Abigail, Tylar Murray, Gabrielle Canonico, Enrique Montes, Frank E. Muller-Karger, Maria T. Kavanaugh, Joaquin Trinanes, and Lynn M. deWitt Oceanography 34(2):130-141

Stable isotope analysis reveals differences in domoic acid accumulation and feeding strategies of key vectors in a California hotspot for outbreaks Bernstein, Sophie, Rocio I. Ruiz-Cooley, Raphael Kudela, Clarissa R. Anderson, Robin Dunkin, and John C. Field Harmful Algae 110:102117 (13 p.)

Zero, one or more broods: reproductive plasticity in response to temperature, food, and body size in the live-bearing rosy rockfish Sebastes rosaceus Beyer, S.G., S.H. Alonzo, and S.M. Sogard Marine Ecology Progress Series 669:151-173

Trophic ecology of sympatric batoid species (Chondrichthyes: Batoidea) assessed by multiple biogeochemical tracers (δ13C, δ15N and total Hg) Bezerra, M.F., J.A. Seminoff, G.E. Lemons, D.G. Slotton, K. Watanabe, and C.T. Lai Environmental Research 199:111398 (12 p.)

Respiratory capacity is twice as important as temperature in explaining patterns of metabolic rate across the vertebrate tree of life Bigman, Jennifer S., Leithen K. M'Gonlgle, Nicholas C. Wegner, and Nicholas K. Dulvy Science Advances 7(19):eabe5163 (11 p.)

Training a generation of avid journal manuscript reviewers Bograd, Steven J., and Gayle Barbin Zydlewski Fisheries Oceanography 30(1):1-2

Quantifying ecosystem responses to environmental and human pressures in the marine ecosystem off the west coast of Vancouver Island Boldt, Jennifer L., Elliott L. Hazen, Mary E. Hunsicker, Caihong Fu, R. Ian Perry, Xiujuan Shan Ecological Indicators 132:108232 (13 p.)

Estimating economic losses to small-scale fishers from shark conservation: A hedonic price analysis Booth, Hollie, Dale Squires, Irfan Yulianto, Benaya Simeon, Muhsin, Luky Adrianto, and Eleanor Jane Milner-Gulland Conservation Science and Practice 3(9):e494 (17 p.)

Bycatch levies could reconcile trade-offs between blue growth and biodiversity conservation Booth, Hollie, William N.S. Arlidge, Dale Squires, and E.J. Milner-Gulland Nature Ecology & Evolution 5:715-725

Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries Boudry, Pierre, Francois Allal, Muhammad L. Aslam, Luca Bargelloni, Tim P. Bean, Sophie Brard-Fudulea, Marine S.O. Brieuc, Federica C.F. Calboli, John Gilbey, Pierrick Haffray, Jean-Baptiste Lamy, Romain Morvezen, Catherine Purcell, Paulo A. Prodohl, Marc Vandeputte, Geoffrey C. Waldbieser, Anna K. Sonesson, and Ross D. Houston Aquaculture Reports 20:100700 (14 p.)

Line-transect abundance estimates of cetaceans in U.S. waters around the Hawaiian Islands in 2002, 2010, and 2017 Bradford, Amanda L., Erin M. Oleson, Karin A. Forney, Jeff E. Moore, and Jay Barlow U.S. Department of Commerce, NOAA Technical Memorandum NMFS-PIFSC-115. 45 p.

A deepening understanding of animal culture suggests lessons for conservation Brakes, Philippa, Emma L. Carroll, Sasha R.X. Dalle, Sally A. Keith, Peter K. McGregor, Sarah L. Mesnick, Michael J. Noad, Luke Rendell, Martha M. Robbins, Christian Rutz, Alex Thornton, Andrew Whiten, Martin J. Whiting, Lucy M. Aplin, Stuart Bearhop, Paolo Ciucci, Vicki Fishlock, John K.B. Ford, Giuseppe Notarbartolo di Sciara, Mark P. Simmonds, Fernando Spina, Paul R. Wade, Hal Whitehead, James Williams, and Ellen C. Garland Proceedings of the Royal Society B 288(1949):20202718 (10 p.)

Taxonomic revision of the South Asian river dolphins (Platanista): Indus and Ganges River dolphins are separate species Braulik, Gill T., Frederick I. Archer, Uzma Khan, Mohammad Imran, Ravindra K. Sinha, Thomas A. Jefferson, Carl Donovan, and Jeff A. Graves Marine Mammal Science 37(3):1022-1059

Recent cetacean taxonomic changes and conservation action Braulik, Gill T., Randall R. Reeves, and Barbara L. Taylor Aquatic Conservation 31(10):3011-3012

A satellite-based mobile warning system to reduce interactions with an endangered species Breece, Matthew W., Matthew J. Oliver, Dewayne A. Fox, Edward A. Hale, Danielle E. Haulsee, Matthew Shatley, Steven J. Bograd, Elliott L. Hazen, and Heather Welch Ecological Applications 31(6):e02358 (16 p.)

Ecosystem based multi-species management using Empirical Dynamic Programming Brias, Antoine, and Stephan B. Munch Ecological Modelling 441:109423 (11 p.)

Dynamic thermal corridor may connect endangered loggerhead sea turtles across the Pacific Ocean Briscoe, Dana K., Calandra N. Turner Tomaszewicz, Jeffrey A. Seminoff, Denise M. Parker, George H. Balazs, Jeffrey J. Polovina, Masanori Kurita, Hitoshi Okamoto, Tomomi Saito, Marc R. Rice, and Larry B. Crowder Frontiers in Marine Science 8:630590 (10 p.)

Equity in science: advocating for a new triple-blind review system Brodie, Stephanie, Andre Frainer, Maria Grazia Pennino, Shan Jiang, Laura Kaikkonen, Jon Lopez, Kelly Ortega-Cisneros, Carl A. Peters, Samiya A. Selim, and Natasa Vaidianu Trends in Ecology and Evolution 36(11):957-959

Exploring timescales of predictability in species distributions Brodie, Stephanie, Briana Abrahms, Steven J. Bograd, Gemma Carroll, Elliott L. Hazen, Barbara A. Muhling, Mercedes Pozo Buil, James A. Smith, Heather Welch, and Michael G. Jacox Ecography 44(6):832-844

Sato's beaked whale: A new cetacean species discovered around Japan Brownell, Robert L. Jr., and Toshio Kasuya Marine Mammal Science 37(2):768-771

Productivity and change in fish and squid in the Southern Ocean Caccavo, Jilda Alicia, Henrik Christiansen, Andrew J. Constable, Laura Ghigliotti, Rowan Trebilco, Cassandra M. Brooks, Cedric Cotte, Thomas Desvignes, Tracey Dornan, Christopher D. Jones, Philippe Koubbi, Ryan A. Saunders, Anneli Strobel, Marino Vacchi, Anton P. van de Putte, Andrea Walters, Claire M. Waluda, Briannyn L. Woods, and Jose C. Xavier Frontiers in Ecology and Evolution 9:624918 (25 p.)

Social exploitation of extensive, ephermeral, environmentally controlled prey patches by supergroups of rorqual whales Cade, David E., James A. Fahlbusch, William K. Oestreich, John Ryan, John Calambokidis, Ken P. Findlay, Ari S. Friedlaender, Elliott L. Hazen, S. Mduduzi Seakamela, and Jeremy A. Goldbogen Animal Behaviour 182:251-266

Predator-scale spatial analysis of intra-patch prey distribution reveals the energetic drivers of rorqual whale super-group formation Cade, David E., S. Mduduzi Seakamela, Ken P. Findlay, Julie Fukunaga, Shirel R. Kahane-Rapport, Joseph D. Warren, John Calambokidis, James A. Fahlbusch, Aris S. Friedlaender, Elliott L. Hazen, Deon Kotze, Steven McCue, Michael Meyer, William K. Oestreich, Machiel G. Oudejans, Christopher Wilke, and Jeremy A. Goldbogen Functional Ecology 35(4):894-908

Polygenic basis and the role of genome duplication in adaptation to similar selective environments Campbell, Matthew A., Eric C. Anderson, John Carlos Garza, and Devon E. Pearse Journal of Heredity 112(7):614-625

Assessment of attraction and avoidance behaviors of fish in response to the proximity of transiting underwater vehicles Campbell, Matthew D., Ariane Huddleston, David Somerton, M. Elizabeth Clarke, Waldo Wakefield, Steve Murawski, Chris Taylor, Hanumant Singh, Yogesh Girdhar, and Mary Yoklavich Fishery Bulletin 119(4):216-230

Estimates of marine mammal, sea turtle, and seabird bycatch in the California large-mesh drift gillnet fishery: 1990-2019 Carretta, James V. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-654. 72 p.

U.S. Pacific marine mammal stock assessments: 2020 Carretta, James V., Erin M. Oleson, Karin A. Forney, Marcia M. Muto, David W. Weller, Aimee R. Lang, Jason Baker, Brad Hanson, Anthony J. Orr, Jay Barlow, Jeffrey E. Moore, and Robert L. Brownell Jr. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-646. 389 p.

Sources of human-related injury and mortality for U.S. Pacific west coast marine mammal stock assessments, 2015-2019 Carretta, James V., Justin Greenman, Kristin Wilkinson, James Freed, Lauren Saez, Dan Lawson, Justin Viezbicke, and Jason Jannot U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-643. 157 p.

Speciation in the deep: genomics and morphology reveal a new species of beaked whale Mesoplodon eueu Carroll, Emma L., Michael R. McGowen, Morgan L. McCarthy, Felix G. Marx, Natacha Aguilar, Merel L. Dalebout, Sascha Dreyer, Oscar E. Gaggiotti, Sabine S. Hansen, Anton van Helden, Aubrie B. Onoufriou, Robin W. Baird, C. Scott Baker, Simon Berrow, Danielle Cholewiak, Diane Claridge, Rochell Constantine, Nicholas J. Davison, Catarina Eira, R. Ewan Fordyce, John Gatesy, G.J. Greg Hofmeyr, Vidal Martin, James G. Mead, Antonio A. Mignucci-Giannoni, Phillip A. Morin, Cristel Reyes, Emer Rogan, Massimiliano Rosso, Monica A. Silva, Mark S. Springer, Debbie Steel, and Morten Tange Olsen Proceedings of the Royal Society B 288(1961):20211213 (10 p.)

Flexible use of a dynamic energy landscape buffers a marine predator against extreme climate variability Carroll, Gemma, Stephanie Brodie, Rebecca Whitlock, James Ganong, Steven J. Bograd, Elliott Hazen, and Barbara A. Block Proceedings of the Royal Society B 288(1956):20210671 (9 p.)

A cookbook for using model diagnostics in integrated stock assessments Carvalho, Felipe, Henning Winker, Dean Courtney, Maia Kapur, Laurence Kell, Massimiliano Cardinale, Michael Schirripa, Toshihide Kitakado, Dawit Yemane, Kevin R. Piner, Mark N. Maunder, Ian Taylor, Chantel R. Wetzel, Kathryn Doering, Kelli F. Johnson, and Richard D. Methot Fisheries Research 240:105959 (18 p.)

Climate-driven range shifts are rapid yet variable among recreationally important coastal-pelagic fishes Champion, Curtis, Stephanie Brodie, and Melinda A. Coleman Frontiers in Marine Science 8:622299 (13 p.)

Trophic ecology of yellowtail rockfish (Sebastes flavidus) during a marine heat wave off central California, USA Chiu, Jennifer A., Joseph J. Bizzarro, and Richard M. Starr PLoS ONE 16(5):e0251499 (20 p.)

Anomalous poleward advection facilitates episodic range expansions of pelagic red crabs in the eastern North Pacific Cimino, Megan A., Michael G. Jacox, Steven J. Bograd, Stephanie Brodie, Gemma Carroll, Elliott L. Hazen, Bertha E. Lavaniegos, Mark M. Morales, Erin Satterthwaite, and Ryan R. Rykaczewski Limnology and Oceanography 66(8):3176-3189

Threatened salmon rely on a rare life history strategy in a warming landscape Cordoleani, F., C.C. Phillis, A.M. Sturrock, A.M. FitzGerald, A. Malkassian, G.E. Whitman, P.K. Weber, and R.C. Johnson Nature Climate Change 11:982-988

Abundance, survival, and annual rate of change of Cuvier's beaked whales (Ziphius cavirostris) on a Navy sonar range Curtis, K. Alexandra, Erin A. Falcone, Gregory S. Schorr, Jeffrey E. Moore, David J. Moretti, Jay Barlow, and Erin Keene Marine Mammal Science 37(2):399-419

Marine algal toxins and their vectors in southern California cetaceans Danil, Kerri, Michelle Berman, Elizabeth Frame, Antonella Preti, Spencer E. Fire, Tod Leighfield, Jim Carretta, Melissa L. Carter, and Kathi Lefebvre Harmful Algae 103:102000

Uncommon stranding event of bottlenose dolphins (Tursiops truncatus) in San Diego, California (October 2015) Danil, Kerri, Nicole Beaulieu-McCoy, Sophie Dennison, David Rotstein, Teri Rowles, and Sarah Wilkin U.S. Department of Commerce, NOAA Technical Memorandum NMFS-SWFSC-641. 38 p.

Differential sensitivity to warming and hypoxia during development and long-term effects of developmental exposure in early life stage Chinook salmon Del Rio, Annelise M., Gabriella N. Mukai, Benjamin T. Martin, Rachel C. Johnson, Nann A. Fangue, Joshua A. Israel, and Anne E. Todgham Conservation Physiology 9(1):coab054 (17 p.)

Model-based estimation of average fish weights from recreational fisheries Dick, E.J., Jason Edwards, and Tien-Shui Tsou Fisheries Research 241:106002 (9 p.)

The status of vermilion rockfish (Sebastes miniatus) and sunset rockfish (Sebastes crocotulus) in U.S. waters off the coast of California south of Point Conception in 2021 Dick, E.J., Melissa H. Monk, Tanya L. Rogers, John C. Field, and Emma M. Saas Pacific Fishery Management Council, Portland, Oregon. 311 p.

Winter and summer biogeography of macrozooplankton community structure in the northern Antarctic Peninsula ecosystem Dietrich, Kimberly S., Jarrod A. Santora, and Christian S. Reiss Progress in Oceanography 196:102610 (16 p.)

Modeling the past, present, and future distributions of endangered white abalone (Haliotis sorenseni) to inform recovery efforts in California DiNardo, Jordan, Kevin L. Stierhoff, and Brice X. Semmens PLoS ONE 16(11): e0259716

Role of geostrophic currents in future changes of coastal upwelling in the California Current System Ding, Hui, Michael A. Alexander, and Michael G. Jacox Geophysical Research Letters 48(3):e2020GL090768 (10 p.)

Straying and life history of adult steelhead in a small California coastal stream revealed by otolith natural tags and genetic stock identification Donohoe, Christopher J., David E. Rundio, Devon E. Pearse, and Thomas H. Williams North American Journal of Fisheries Management 41(3):711-723

Next-generation regional ocean projections for living marine resource management in a changing climate Drenkard, Elizabeth J., Charles Stock, Andrew C. Ross, Keith W. Dixon, Alistair Adcroft, Michael Alexander, Venkatramani Balaji, Steven J. Bograd, Momme Butenschon, Wei Cheng, Enrique Curchitser, Emanuele Di Lorenzo, Raphael Dussin, Alan C. Haynie, Matthew Harrison, Albert Hermann, Anne Hollowed, Kirstin Holsman, Jason Holt, Michael G. Jacox, Chan Joo Jang, Kelly A. Kearney, Barbara A. Muhling, Mercedes Pozo Buil, Vincent Saba, Ann Britt Sando, Desiree Tommasi, and Muyin Wang ICES Journal of Marine 78(6):1969-1987

A more comprehensive climate vulnerability assessment framework for fisheries social-ecological systems Dudley, Peter N., Tanya L. Rogers, Mark M. Morales, Amanda D. Stoltz, Casey J. Sheridan, Anne K. Beulke, Carrie Pomeroy, and Mark H. Carr Frontiers in Marine Science 8:678099 (22 p.)